Detail



ID : Ahg911952

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|911952|Al_scaffold_0001_2206
Sequence
ATGGTGGAAC AGACTGTGGT TAGAGAACAT ATTAAAGCGA GAGTCATGTC ATTAGTGAGG CCAGCTGAGC CATCCGCTAC ATCGTATAGG AACCCGAAGC TTTACTCGTT GAATGATAAT GGTAACAACA ATGGTGTCAC TTCTGCTCAA ATCTTTGATC CAGACAGGTC CAAGAACACT TGTCTGACTG ATGATTCTTA CCCAAGCCAA AGTTATGAGA AGTACTTTCT CGATTCGCCA CCAGATGAGT TTGTACAACA TCCTATTGGC TCTGGTGCCT CGGTTCAGCT CATTTGGCTC TTTGGACTCG TTTCCGTATC AGCCAAGACC GGTTCTTGGA TGTTCCATGG AATTTCAGAA GAGTTTGATG ATGAGCAAAT GAGATCAAAG ATTCAAGAGC TTGAAAGAGC TCTTCTCGGC GATGAAGATG AGAAAATGGT TGGAATAGAT AATCTGATGG AGATTGACAA CGAATGGTCG TACCAAAACG AAAGTGAACA GCATCAGGAC TCGCCCAAAG AATCATCATC TGCAGATTCC AACTCTCATG TAAGTAGCAA AGAAGTGGTG TCGCAAGGCA CTCCAAAGCA AATCTTGATA TCTTGTGCTC GTGCGTTATC CGAAGGGAAA GCAGAATTAG CTTTGTCAAT GGTAAATGAG CTGAGGCAGA TTGTTTCGAT CCAAGGAGAT CCTTCTCAGA GAATCGCAGC TTACATGGTG GAAGGTCTAG CTGCAAGAAT GGCTGCTTCA GGGAAATTCC TCTACAGAGC ATTGAAATGC AAAGAGCCTC CTTCTGATGA GAGGCTTGCA GCTATGCAAG TCCTCTTTGA AGTCTGCCCT TGTTTCAAAT TCGGGTTTTT AGCAGCTAAT GGTGCGATAA TTGAAGCAAT CAAAGGGAAC CAATACATGA CACTGATACG GTACGTTGCT GAGTTACCCG GTAAACGTCC TCGCCTGAGT CCAACGCTCA ATCGGAGGGT TAAGAATCAT TGGTTTAAGA CTGGAACAAC TTGCAGAGCA GTGCCTTCAA AGACTTCAAT TGTCTCTCCA TCGACACTCG GTTGCAAACC CGGAGAAACC TTAATTGTGA ACTTTGCATT CCAGCTTCAC CACATGCCAG ACGAGAGTGT CACAACAGTG AACCAGCGGG ACGAGCTACT CCACATGGTC AAAAGCCTGA ACCCAAAGCT CGTCACAGTC GTTGAACAAG ACGTGAACAC AAACACTTCC CCGTTCTTCT CCAGATTCAT AGAGGCTTAC GAGTACTACT CAGCGGTTTT CGAGTCTCTA GACATGACAC TTCCAAGAGA AAGCCAAGAG AGGATGAATG TAGAAAGACA GTGTCTTGCT AGAGACATTG CCAACATCGT TGCTTGCGAA GGAGAAGAGC GGATAGAGAG ATACGAGGCT GCCGGAAAAT GGAGAGCAAG GATGATGATG GCAGGATTCA ATCCAAGACC AATGAGTGCT AAAGTAACCA ACAATATACA GAACCTCATA AAGCAACAGT ATTGCAATAG GTACAAGCTT AAAGAAGAAA TGGGTGAGCT CCATTTTTGC TGGGAGGAGA AAAGCTTAAT CGTTCGTTGC TTCAGCTTGG AGAGTGGAGA AGCGTACATG ATGATGGAGA AAACAGTGGC TGCGATACCA CAGAAGAGTT TTCTTGAGTT TCCATGGAGG GCAGAGAGAG AGACGAGAGC TACTGTTGCG AATACGGTCA AGACGCAAGT GAAGATACCA AAGATCTTTG CTTTCTCCTT CTTTGGTGCG TAG 
Length1773
Protein Sequence
Protein Residue
Map Locationscaffold_1: 8680107.. 8682145
Download Sequence
A.thaliana
AGI-codeAT1G21450.1
DescriptionSCARECROW-like 1
TAIR curator summaryEncodes a scarecrow-like protein (SCL1). Member of GRAS gene family.
Alias[SCL1][SCARECROW-like 1]
Gene coexpression
MR
MR Locus Description
44.7325 Ahg934312 UDP-Glycosyltransferase superfamily protein
63.435 Ahg494088 Thioredoxin superfamily protein
67.8528 Ahg474819 galactinol synthase 2
69.4982 Ahg470358 Glutaredoxin family protein
85.4693 Ahg950924 peptidemethionine sulfoxide reductase 1
92.7901 Ahg336505 leucine-rich repeat transmembrane protein kinase family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression