Detail



ID : Ahg914489

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|914489|Al_scaffold_0001_4743
Sequence
ATGAAGGGTT CTTCAGAATC TAATTCCAGA GGATTAAACA ACACATCTGG TGTTTCAGAG TTTTGTACTG ATGGTTCTAA GTCTTTGTCT CACATTGATT ATGTCAGAAG CTTACTTGGT TCACACAAAG AAGATAACTT GGTTGGACTT GATGATGACT CTATTGTTAG AGCTTTGGAA TGTGAGGATG TTAGCTTGCG TCAGTGGTTA GACAATCCGG ACCGATCCGT TGATGCCTTT GAGTGTTTTC ACGTTTTCAG ACAGATTGTT GAGATTGTGA ATGCAGCTCA CTCCCAAGGC ATTGTTGTTC ATAATGTTAG GCCTTCTTGT TTCGTTATGT CTTCGTTTAA CCATGTTTCG TTTATCGAAT CCGCTTCATG TTCGGATTCC GGGTCTGATG AGGATGCAAC AACAAAGTCT CGAGAGATTG GTAGCTCGAG AAAAGATGAG TTTCTATCAG AGGAAGTAAC GAAGCAACCT TTCCCTATGA AACAGATATT AGCAATGGAG ATGAGTTGGT ACACAAGTCC TGAAGAAGAT AATGGTTCTC CGAGTAATTG TGCTTCTGAT GTTTATCGTC TTGGTGTTCT TCTCTTTGAG CTATTTTGCC CTGTCTCCTC AAGAGAAGAG AAGTCAAGAA CTATGTCTAG TTTAAGACAT CGTGTTCTTC CACCTCAGAT ATTGCTCAAT AGGCCTAAAG AAGCTTCCTT TTGCCTGTGG TTACTGCATC CTGAGCCTAG CTATCGACCA TCGATGAGTG AGTTGCTACA AAGTGAGTTT ATCAACGAAC CTAGAGAGAA TTTGGAAGAA CGCGAAGCTG CGATGGAGCT ACGGGATAGA ATCGAGGAAC AAGAGTTATT GCTTGAGTTC TTGTTTCTGA TTCAACAGAG AAAACAAGAA GCTGCAGACA AATTGCGGGA TACGATATCG CTTCTTTCTT CTGATATTGA TCAAGTCGTA AAGCGACAGT TGGTTTTACA GCAAAAAGGG AGTGATGTCC GTTCGTTTTT GGCCTCAAGA AAACGGATTA GACAAGGAGT TGAGACAGCT GCGGCAAAGG AAGAAAATGA TGAGGAGGAA TCTAAGCTTG ATGATACTCT AGAAAGTACA CTACTTGAAA GCTCTCGGTT AATGAGAAAT TTGAAGAAAC TGGAATCAGT CTACTTTGCA ATGCGGTACA GACAGATTAA GGCTGCTGCT GCTGCTGAAA AACCGTTGGC TAGATATTAT TCGGCATTGA GTAGTAATGG TAGAAGTTCA GAAAAAAGTT CAATGAGCAG CCCGACACAA CTACCAAAAG ATCCTATCAA TGATTCAAGA CAGGGCGGTT GGATCGATCC ATTCCTCGAG GGTTTGTGCA AGTATTTATC TTTTAGTAAG CTAAGAGTGA AAGCCGATTT GAAGCAAGGA GACTTGTTGA ACTCGTCTAA CCTTGTTTGT GCAATTGGGT TTGACCGTGA TGGGGAGTTT TTCGCTACGG CAGGCGTCAA CAAAAAGATT AAGATATTTG AATGCGAGTC GATAATAAAA GATGGGCGGG ACATTCATTA CCCGGTTGTG GAACTTGCTA GCCGGTCTAA GCTTAGTGGT ATATGTTGGA ACAGTTACAT TAAGAGCCAA GTCGCATCAA GTAACTTTGA AGGCGTAGTT CAGGTTTGGG ATGTTGCAAG AAGCCAGTTG GTTACAGAGA TGAAAGAGCA TGAGAAGCGT GTATGGTCCA TCGATTATTC ATCAGCAGAT CCAACATTGT TAGCCAGCGG TAGTGACGAT GGTTCGGTTA AGCTCTGGAG TATCAATCAG GGGGTTAGTA TTGGAACCAT CAAGACAAAG GCAAACATAT GTTGTGTCCA GTTTCCGTCA GAGTCGGGTC GGTCTTTAAC ATTTGGTTCA GCAGATCACA AAGTTTACTA CTATGATCTA AGGAGCCCCA AGCTTCCTCT TTGTACAATG ATTGGTCACA ACAAGACCGT GAGTTATGTC AGATTTATGG ATTCATCAAC ACTTGTGTCG TCTTCTACGG ATAACACGCT GAAGCTATGG GACTTATCAA TGTCTATTTC CGGTGTTAAC GAAACACCTC TTCACTCATT CATGGGACAC ACTAATGTTA AGAACTTTGT TGGATTATCG GTCTCTGACG GGTATATAGC AACAGGCTCG GAGACTAATG AGGTTTTTGT GTACCACAAG GCATTTCCAA TGCCGGTTTT GTCGTACAAG TTCAAAACTA TAGACCCTGT GTCGGATCTC GAAGTAGACG ATGCCTCGCA GTTCATATCC TCAGTCTGCT GGCGGGGACA GTCCTCGACC TTAGTCGCTG CAAACTCCAC TGGCAACATC AAGATTCTGG AGATGGTATG A 
Length2361
Protein Sequence
Protein Residue
Map Locationscaffold_1: 26908562.. 26911460
Download Sequence
A.thaliana
AGI-codeAT1G53090.1
DescriptionSPA1-related 4
TAIR curator summaryEncodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.
Alias[SPA4][SPA1-related 4]
Gene coexpression
MR
MR Locus Description
3.4641 Ahg926642 homology to ABI1
4.79583 Ahg492115 mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase
6.63325 Ahg474897 Glutaredoxin family protein
12.2474 Ahg488432 CONSTANS-like 1
12.9615 Ahg480385
13.4164 Ahg492916 Major facilitator superfamily protein
17.4929 Ahg488595 Homeodomain-like superfamily protein
18.3303 Ahg494217 tonoplast dicarboxylate transporter
20 Ahg922817 plastid movement impaired1
20.3961 Ahg929326 SPA1-related 3
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression