Detail



ID : Ahg921008

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|921008|scaffold_102289.1
Sequence
CAATCGAATC AAGATTAACT ATGGCTGAGG AGTACAAGAA CAACGTTCCC GAGCACGAGA CACCAAAGGT CGCAACAGAG GAATCACCAG CGACGACTAC AGAGGTTACG GATCGTGGAT TGTTTGATTT CTTGGGGAAG AAGGAAGAGG AAGTGAAACC TCAAGAGACG ACGACGCTCG AGCCTGAGTT CGATCACAAG GCTCAGAACT CTGAACCGGA GTTAGCTGCG GAGCACGAGG AAGTGAAGGA GAACAAGATT ACTCTCCTTG AAGAGCTTCA AGAGAAGACT GAGGAAGATG AGGAGAACAA GCCTAGTGTC ATCGAAAAGC TTCACCGATC CAACGGCTCT GCTTCCTCTT CGAGCGATGA AGAAGGTGAG GAGAAGAAGG AGAAGAAGAA GATCGTTGAA GGAGAGGAAG AGAAGAAAGG ACTAGCGGAG AAGATCAAGG AGAAGCTTCC AGGCCACCAC GACAAGAAAC CAGAGGATGA TGTACCAGTT TCCACCACCA TCCAGGTACC AGTGTCGGAG AGTGTGGTGG AGCATGACCA ACCCGAGGAA GAGAAGAAAG GACCAGTGCA GAAGATCAAG GAGAAGCTTC CTGGCCACCA CGACAAGACT GCAGAGGATT CACCAGCTGT CACCAGCACG CCGTTGGTTG TAACGGAGCA TCCAGTGGAG CCTACGACGG AGCATCCGGA GGAGCATCCG GAGGAGAAGA AGGGCATTTT GGGAAAGATT AAAGAGAAGC TTCCAGGTTA TCATGCCAAG ACCACTGAAG AGGAAGAGAA GAAAGTAAAA GAGACTGATG CTTAAGAAAA ATGGTTAAAG AATGAATAAT GATGTGGGAG T 
Length851
Protein Sequence
Protein Residue
Map Locationscaffold_1: 8341759.. 8342736
Download Sequence
A.thaliana
AGI-codeAT1G20440.1
Descriptioncold-regulated 47
TAIR curator summaryBelongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant.
Alias[AtCOR47][COR47][RD17][cold-regulated 47]
Gene coexpression
MR
MR Locus Description
1 Ahg472273 Dehydrin family protein
3 Ahg924738 flavin-monooxygenase glucosinolate S-oxygenase 4
3.74166 Ahg481185 Late embryogenesis abundant protein, group 6
7.34847 Ahg495299 CAP160 protein
7.48331 Ahg941255
8.77496 Ahg496967 Dehydrin family protein
9.48683 Ahg333508 Late embryogenesis abundant protein
9.79796 Ahg949787 low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
10.583 Ahg483960 TSPO(outer membrane tryptophan-rich sensory protein)-related
11.225 Ahg325294 Late Embryogenesis Abundant 4-5
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression