Detail


ID : Ahg921783

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|921783|scaffold_103064.1
Sequence
GTGAGGAGAA GGAGGAGAAG ATGTTGTGTG CTTGTTCAGG CGAACAATTC CGGTTCGAGG ATCAGCCCGG TTCGCCGGAA TCCCTAGCTA CTAGAGATTT CTCAGCTAGT GGACTTTCTT CTCGAAATGG CGGAGGCGAT TGGGATTCGA AATTGGAAGA TATTCAAGTC GATGAAGCTG AATCGACTTT AAAGGAAGCT CTATCACTCA ACTATGAGGA AGCTAGGGCT TTGTTGGGGA GACTTGAATA TCAGAGAGGT AATTTCGATG CAGCGCTTCA GGTGTTTAAG GGGATTGACA TTAAGGTCTT AACTCCAAGG ATAATCAAAG CCATTGTTGA GAGAACTCGT CCTTGCAAAC CGCGCTCCAA AGTTGTTAGT GTGCCTCCCT GCACAATGTC TATGCATTCA GTCAGTTTAC TTCTTGAAGC AATCTTGCTT AAAGCTAGAT CACTTGAAGA ACTCGGCTCT TACCAAGAGG CTGCAGAAGA ATGCAAAATA ATCCTGGACG TGGTTGAATC TGCACTGCCG AGTGGCATGC CTGACGGAAT CAGCGGATTC TCTAAACTGC AGGACATTTT TCAGAAGGCC CTGGAATTGC TTCCTTTACT ATGGACCAAA GCGGGGAATC ATCATGAAAC TATTGCTTCA TATCGCCGTG CTTTATCCAG ACCATGGAAT TTGGATCCCC AGAGGTTAGC TGTTACGCAG AAATCCTTAG CTTTGGTTTT ACTTTACGGG AGTGTTGAGG CATGCCCAAA AGACAACATC GAGGAAGCAA TTGTGTTGCT AATGTTACTT GTAAAGAAGA TGGTGGTTGG GGACATACAG TGGGATGCAG AGCTCATGGA TCATCTCACG TACGCCCTTT CCATGACTGG ACAGTTTGAA GTGTTAGCGA ACTATCTAGA GGAGACTCTT CCAGGTGTTT ATACACGCGG GGAGAGATGG TACCTTCTCT CCCTTTGTTA CAGTGCTGCT GGGATCGATA CAGCAGCCAT CAATCTATTA AAGATGGCCC TAGGCCCTTC TGAATCAAGA CAAATACCAC ACATTCCTTG GTTATTGTTT GGAGCAAAGC TGTGCTCTAA AGATCCAAAA CACTCAAGGG ACGGCATAAA TTTCTCTCAT AGGCTGCTCG ACTTGGCAAA CAGTCAGAGT GAACATCTTT TGAGTCAAGC ACACAAGTTC CTTGGTGTGT GCTATGGAAA CGCTGCAAGA AGTTCCAAAT TAGACTCTGA ACGGGTTTTC CTTCAGAAAA AATCTCTGTT CTCTTTAAAT GAAGCAGCAA AGAGGGGCAA GGCTGATCCG GAACTAGACG TTATATTTAA CCTAAGCGTT GAGAATGCAG TTCAAAGAAA TGTTCAGGCG GCTTTGGATG GTGCGGTTGA GTATTCTAGT ATGGTGGGAG GAGTTTCAAC TAAAGGATGG AAACATTTAG CTATTGTCCT TTCAGCGGAG AAACGGCTCA AGGATGCTGA ATCAATTCTG GACTTCACCA TGGAAGAGGC TGGTGACCTT GAAAAGTTAG AGCTTCTGAA GTCAAAAGCT ATGCTTCAGA TGGCTCAAGA ACAACCTAAG CAGGCAATGA AGACATGCAG CAGCTTGCTG GGCCTAATTC GAGCGCAAGA GAAATCTGAA AAGTCCGAGG CTCTGCTACA GAAATTTGAA ACGGAAGCTT GGCAAGACCT GGCCTCTGTC TATGGAAAGC TAGGTTCATG GTCAGATGCA GAAACATGTC TCGAGAAGGC AAGATCCATG TGCTATTATT CTCCCAGAGG CTGGAATGAA ACAGGTTTGT GTTTAGAAGC CAAATCACTT CATGAAGAGG CTTTAACATC CTTCTTCCTC TCACTCTCGA TCGAACCAGA TCACGTACCC AGCATTGTTT CAATAGCAGA GGTTATGATG AAATCCGGGG GTGAATCACT TCCAACCGCT AAAAGTTTTC TGATGAATGC CTTAAAATTA GACCCGAGAA ATCACGATGC ATGGATGAAG CTAGGGCACG TTGCAAAGAA GCAAGGCATG TCACAGCAAG CTGCAGAGTT TTACCAAGCT GCATATGAAC TAGAGCTATC CGCTCCAGTA CAGAGTTTCA TTTGACTTGC AAGATTTTAG GATGA
Length2125
Protein Sequence
Protein Residue
Map Locationscaffold_1: 11414006.. 11416512
Download Sequence
A.thaliana
AGI-codeAT1G27460.1
Descriptionno pollen germination related 1
TAIR curator summaryencodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits.
Alias[NPGR1][no pollen germination related 1]
Gene coexpression
MR
MR Locus Description
2.82843 Ahg487827 Leucine-rich receptor-like protein kinase family protein
4.58258 Ahg947625 DHHC-type zinc finger family protein
6.55744 Ahg913807 transposable element gene
11.4018 Ahg478311 Protein phosphatase 2A regulatory B subunit family protein
14.8661 Ahg478841 Subtilase family protein
15.6525 Ahg931262 Leucine-rich repeat (LRR) family protein
16.4317 Ahg479890 Leucine-rich repeat protein kinase family protein
17.2916 Ahg928694 L-O-methylthreonine resistant 1
22.9783 Ahg496307 Leucine-rich repeat protein kinase family protein
25.1794 Ahg910941 O-Glycosyl hydrolases family 17 protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression