Detail



ID : Ahg928632

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|928632|scaffold_301089.1
Sequence
GCGACTGAAA CGAAACGAGA ATGCCAAATC AAGAAAACAG TTCCTTGCTT CTTTCTCTCA CGCTCTTCGT CTCTTTCTCT GCTTCTTCCT TCTCGCTAAT AAACCCTAGA AACCGCATTG AAGTTGGAGT CGCAGACCTC GGAGATACTC ATATTCCTGC CTCGCTACGA TTTCAGGTAG GGGATGGATT TGCAGAGAGA TACTATAAGA CCTTGCAATA CTATCCGGGG CTTCTTTATC GCTACTATAA CGATGTCAGT AAGATTACAC GGCCTGGACT TGATGGAACG ATGCGTTCCT CTACCCTACA GGACATGATC AAGGATCTTG ATATGCTATC TTCTGGTGGT TTTGATTCGG TTGAGGACCT TGAGGTAACC AGTTTCATGT CCCAAGAATC TCATAGTGGG GGTATCCTCG TCACTGCTGA TGGCTTCTTC ACTTCACACG AGAGACCTGC AAGGAAATTC ACACAAAACT TCTTTCTTGC TCCCCAAGAA AATGACTACT TTGCTTTGAC CGACATGTTC AAGTTTGTTG ATATACCCGA GGCTAATGAC ATTAAGGACT TGAGTGTGAT TCCTGCAGTG CCCAAATCTA CCACCACCAA CACTGAAAAG GATGAGGTTA TAGACCGTCT TGTAGCTCTC AAGGTCGAGA CCCGTCTTAT AGAAGCAGTT CAAGCCGTTA AAACCTCTTT TGATCAAATA CCACCTGATA ACACTTCAGA CATCTTCTTC AGAATCCCGA AACGCTATTA CCCGATCGTC GCCTGTGTTT CTAAGGCTTT CAAAAATCTT GTTAAGTCGC CAGAGCTACA ACAACAGAGA CGTCAACTCG ACAAAGATTC GGTATATTTT TGTTTTAACA ATGGCTCCCC TAATCCTGCT GAATCTATGA CCTGGTTCAG TCTTCGAAAG AGCAATGATA ATCCTAATGA TGACGTCTTT TCCGAAGCAC TTGTTGTGCC CAATGATCAT GAGTGCACCA GAACACTCAG AAATATTTTC TCGTGTGGTT CAGAAATTAT TTTGGTTGGG AGAACATTCA AGCTAACTAT AGGACCTGAA TGCCAAGTTT GGATTTTTGA CAGCATCTGT GGAAGGTTAC GGGAAGCACC TTCTCTGCCC TTAGCGCTAC ATTACTGGAA CTCGGGACTC GTAAGAGACG ACTTGTATGT CTTTGGAACA CCTTTGAAGG CTGATACTCT GCGAGAACGT TTTCAAGTAT ATGGAATCAG GTTCAATCTC CTGTCCCAAA CGTGGTCTGA TCCATTCCCA ACAAAAATGC AGTTCTCGGC ATCAACTCAA TCCGTTGATA AGAACATTTA CCTTTTGACA CGGGAAGGAC TTTATCAGGT ATACAACATT AGTAATGATG TATTCACTTC TTATAGGGAG CCTTATAAGT CTCATACTGC TTGGACGACA TGGACAATGA GTAGTGTTTG TGTGTTTGAA AACGTCTTCT ACTCTTATGA TGCTGTGTAT GGACTGCACT GGTATGACAC CAAGCTTAAT CAGTGGAAAG CTGTTACTGG TAGCACGATG GGAAGGATTG GGCATGGTTT GCTTGGGAAG ACTTGGTCAA TCGCACTTAA GGAATATTAC GGAAAGCTAG TTCTGTTGTG GACAGTTAGG CCAGAAGAAA TTGCTGAGGA TGCTAGGATG ACAGTTTATT ACACTATGAT TGCATTAAGA AGAACCGAAA CAGAGATTTA TGGAGAGGTC GACGAAATTA GAACTTTGGG CACATTACCT CGCCAAGAAG AATGCACGGT CGTCCGACGT CCGAGGAATG CGGCTTCGAA GCCAGAAGCC TCCGCTGCTA AAGCGTTTAA GCTCCGGTCG ATCCAATCCC AGTTCATGTC CAACCACCAT CGAAAGATTT ACACACAGGA AGCAATTCAA TTAAGCGCGA AGCTTCTAGC AATCAATCCG GAGGCCTACA CGGCTTGGAA CTATCGGAAG CTCGCCGTCG AGGATAACCT TTCCCGAATC GACGACTCTG ATCCAAGCTT GGTCAACTCA ATTCTCAATG AAGAACTTGA AGTCGTAGCA ATTGCCCTTC GACGAAATAT CAAGTCCTAT GGGGCTTGGT ATCATCGAAA GTGGATTTTG AATAAATATC AAAAGCTCGA TCTCAGGAAC TTTCACGCTT GGAACTATCG CAGGTTTGTT GTGGAGCTAA CCAAGACGTC ACCACAGGAT GAGTTGCAGT ATACAACTGA TTTAATCAAT GATGTTAGTT TTAGCAACTA TTCTGCGTGG CACAATCGTA GTGCACTTCT TTCAAGTTTA GTCGCAAAAA AGGCTGATGG GTTTATGCCA AAGGAAACGA TTCGTCGTGA ATTAGATTAT GTACATAATG CTATTTTTAC GGACGAAGAT GACCAAAGCG CCTGGTTTTA TTATCTCTGG CTTCTTGATC AAACTGTTAA AATGGAGACT CCTCTTCGCA CTTCCTCGTG GCCTTCTGAT GGTTCCATTA TCATTCTATC TGGACCTGGG TGCTTCAATG GCTCTTCTTC TTCTAAGTTC ACTACTTTCT GTTCCGAGTC TGCTTCTTTT CCACTGATTC TTTACTTTGA CCAAGCCGTC AGTGGAGTAA GCTCGTCTAC TGTTACTATT GATTCTGAAC TACAAGGAAA TCAGGACCTT GTTTGGGAAC CAGTTTCGGA TAAAAACTCT CAACTGTCTT GTGTATGGGT TGCTCGTCTG AAATTTGACA GTACTGAACC TTGCTTTCGC AAGGAAAACA AAGTGAAGGT CAGCCTTGGG AAGTCTCAAG GAATTGTTTC TTCCAGGGGA TGTAACTTGA GCGCTCCTTT TGAGTTTGTA TTTACAGTGC ATATTCATGA CACTGTCGGA GAGCCACAAG AAGGCATTGT TTCGTGGACG GATGGTTTTG ACAATTGGGA TGCACAGTCG AAGGATTTGA ATTCTCTTAT CACCTCGTAT CAGTTAAACG CTGATACAGG TTTTGAGTGG CGTAAGCAAG CTATAAAGAC AGAGATTGAA TGTTTTCGTG ATTTGCATGA CAGCAAATTT GGAAAGCTCA TTCTTGCAAG GCTTTTGATG GCTGAGGAAA CTATGATCTC GGATGATGCT GTTAAGGGTG TCCATTATGT TGAAATCCTC CAGCTGTATA ACGATCTGAT GGTTCTTAAT TCTTCGCATT ACCAGTACTA CAAGGATGAG CACAGCGTAG CTCTTCTCCA CAAGGTGACT TCAAGCACCG AATCCCTGTC CAGACACCTC TTTCTGTACA GGAATATGAA CAATATTGTA TGTCTAAGGC TCAGTAACTT AACATTATCT CGGATAGCCA CTGTCGAGAA GTTTCTATTT GTCCAAATGT TAGATCTCAG TTACAATGAC CTTCATTCCG CTGAAGGATT GGAGGCGATG CAGCTTCTCT GTTGCCTAAA TCTGTGTCAC AACAGAATCA GGAGCTTTTC AGCCCTTGAT TCTCTAAGAC ATCTGAAGCA GCTTAGAGTG TTGGATGTTT CACATAACGA CATGGGCGGC AAGCACCCAG TGGACACAAC AGGGTACCTT TGTTCTAGGC CGCTCTCTAA TTCGGCTGAA ATTGGAAGAC AGGTGCCTTG TAAATACTGG GATGCGTATT TGGTGCTTAG AGATTTGAAG AAACTGAAGC AGTTAGATAT AATAAGAGGC AACGACCTAA TTGCAGGGGA AGAGTTCAGC TCCTTTGTCC GCCAGGTTCT TCCAAAGCTT GTATTGCTTG ATGGCCACAA ACTCGCTAGT TAAAATATAA ATGTTAGGCC ACTT 
Length3794
Protein Sequence
Protein Residue
Map Locationscaffold_3: 3570366.. 3574807
Download Sequence
A.thaliana
AGI-codeAT5G41820.1
DescriptionRAB geranylgeranyl transferase alpha subunit 2
TAIR curator summary
Alias[ATRGTA2][RGTA2][RAB geranylgeranyl transferase alpha subunit 2]
Gene coexpression
MR
MR Locus Description
49.4571 Ahg925574
65.2687 Ahg930999 Ribosomal protein S12/S23 family protein
71.0211 Ahg475597
91.4221 Ahg478991 Aluminium induced protein with YGL and LRDR motifs
92.6607 Ahg918289
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression