Detail



ID : Ahg929326

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|929326|scaffold_301783.1
Sequence
TAGCTTTTGG TGGATGTTAA ATGGAAGGTT CTTCAAATTC TAACTCTAGG GGATTCAATA CCTCTGGTGT TTCAGACAGG AACACTGAGT TCTTACCTGT TGAGAGAATC ACAGCTCGTT CGAAGCCTTC CTCTCATGTT GATGAGTATG TCAGAAGCTT GTTTGGTAGT ACTAGTACAC ACAAGTCCGG TGAAGATGAT TCTTTAGGGA TTGATCCTTT TGTTAGGTCC TTGGAATGGG GTGATGTTAG TTTGAGACAG TGGCTGGATA AACCTGAACG ATCTGTAGAT GTTTTCGAGT GCTTGCACGT TTTCAGACAA ATCGTTGAGA TTGTGAATGC TGCTCACTCT CAAGGCATTG TTATTCATAA TGTCAGGCCT TCTTGTTTTG TCATGTCTTC GTTTAACCAT GTTTCGTTCA TTGAATCCGC TTCTTGTTCG GACTCTGGCT CTGATTCCTT GGAGGATGGT CCAATTAGCC AGAAGGAAAT TGGTAGCTCG AGAAGAGAGG AAACTGTATC GAAAGCTGTT GCGATAGAAG AGAAAGGAGT CTACAATAAG TTTTTGGAGA GACGAATTGA GAAACTAGAG GAAGAAAAGA ATCAACCTTT TCCGATGAAA CATATATTAG CAATGGAGAC AAGTTGGTAT ACAAGCCCTG AAGAGGATGT TGATTCTTCA AGTACTTGTG CTTCAGATGT TTATCGCCTT GGCGTTCTTC TTTTCGAGCT ATTTTGCCCT GTACCTTCAA GAGAAGAGAA ATCAAGAACT ATGTCTAGTT TAAGACATCG CGTTCTTCCG CCTCAGATAT TGCTCAAATG TCCAAAAGAA GCTTCTTTCT GCTTGTGGTT ACTGCATCCT GAGCCAAGTT GTCGACCATC AATGAGTGAC TTGCTGCAAA GCGAGTTTAT AACTGAACCA AGAGATAATT TGGAAGAACG TGAAGCTGCA ATCAAGCTTA GGGACAGAAT CGAGGAACAG GAGTCGTTAC TCGAGTTCTT GTTACTGATT CAACAGAGAA AGCAGGAATC TGCGTATAGA TTGCGTGATA CGGTTGCACT TCTTTCTTCT GACATTGAGC AAGTTGTAAA GAGACAATTA ATTTTGAAGA AAAAGGGAAG CTCACTCTCT GATTTCAGTA AAGATGATCA TCAATATCCC TCTGGTCAGC CAATGATAAG CTTCCAGGCA AACGAGGAGC CATCAGCATT CTTGGCCTCA AGAAAACGAT TTAGACAAGG GATCTCGGCA TTGGAAGACG ATGTTGAAGT TGATGAAGAG AGTCAAGGAA GCACACTTCT TGAAAGCTCC CGGTTGATGA GAAACTTCAA GAAACTAGAA TCGGTCTACT TTCTGACAAG GCGCAGGCAA ATGAAGGCTG CTGCTTCAGG GAAATCATTA ACTAGACACT CGCCGTTAAG TAGTGAAAAT GGAAGAGGTT CAATGATTGT CTCAGAGAAA AGCTCAGTAA GCAACCCCGC CGCACCTAAA GATTTCTACA ATCATGATTC GAGACAAGGT GGGTGGATAG ATCCATTCCT TGAGGGTTTG TGTAGATATT TATCATTCAG TCAGCTAAGA GTGAAAGCAG ATTTGAAACA AGGAGATTTG TTGAACTCTT CTAACCTCGT TTGCGCCCTT GCTTTTGACC GGGATGGAGA ATTATTCGCC ACGGCGGGTG TCAACAAGAA AATCAAGATA TTTGAATGTA ATTCCATTGT AAACAATAAC CGGGATATTC ACTATCCGGT TGTGGAACTG GCTGGTTGGT CAAAGTTAAG TAGTTTATGT TGGAACAGCT ACATAAAGAG CCAAATTGCA TCAAGTAACT TTGATGGTGT GGTTCAGATA TGGGATGTTG CGAGAAGCCA GTTGGTTACA GAGATGAAGG AGCACAAGAA GCGAGTATGG TCCATCGATA TATCATCAGC AGACCCGACT TTGCTGGCTA GCGGAAGCGA TGATGGAACC GGAGTTAGCA TTGGGACCAT TAAGACAAAG GCCAATGTAT GCTGTGTCCA GTTTCCATCA GACTCAGGAC GGTCTCTAGC ATTTGGTTCT GCAGATCATA AAGTGTATTA CTACGATCTC CGAAACCCCA AGATTCCTCT TTGCACAATG ATTGGTCATA GCAAGACAGT GAGTTATGTC AAGTTTGTAG ATTCATCCAC TCTTGTGTCC TCTTCTACTG ATAACACACT GAAGCTTTGG GACTTGTCGA TGTCTGCTTC TGGGATTAAT GAAACCCCTC TTCACTCATT CACTGGGCAC ACTAATTTAA AGAACTTTGT TGGCCTATCG GTCTCTGATG GGTATATAGC AACAGGCTCA GAGACTAACG AGGTTTTCGT GTACCACAAG GCTTTCCCAA TGCCAGTGAT GTCGTACATG TTCAACAACA CTGACTCTGT GTCTGGTCTC GAAGTGGACG ATGCCTCACA GTTCATATCT TCGATCTGCT GGCGAGGACA GTCGTCTACG TTAGTCGCTG CTAACTCCAA TGGCAACATC AAAATTCTGG AGATGATGGC TTGAGCCTCT CACAAATCTC TTGTTCTTCT TCTCCGCAAG AGATCTGCTC TGCTGGAGTG ATTGATATAG GGTAAACCAT TT 
Length2612
Protein Sequence
Protein Residue
Map Locationscaffold_3: 6072425.. 6075714
Download Sequence
A.thaliana
AGI-codeAT3G15354.1
DescriptionSPA1-related 3
TAIR curator summaryEncodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA3 (and SPA4) predominantly regulates elongation growth in adult plants.
Alias[SPA3][SPA1-related 3]
Gene coexpression
MR
MR Locus Description
3.4641 Ahg487134 permease, cytosine/purines, uracil, thiamine, allantoin family protein
8.12404 Ahg494796 Insulinase (Peptidase family M16) family protein
10.6771 Ahg492115 mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase
15.4919 Ahg331125 Leucine carboxyl methyltransferase
16.3095 Ahg315473
16.7332 Ahg480385
17.3494 Ahg951392 kinesin like protein for actin based chloroplast movement 2
18 Ahg927108 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein
18.4391 Ahg471868 high chlorophyll fluorescence phenotype 173
18.9737 Ahg497022 Transmembrane amino acid transporter family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression