Detail



ID : Ahg930834

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|930834|scaffold_303291.1
Sequence
TCCTTTCATT GTAGTTTAAG AAAAGATTAC GATAATGGCT ACATCAGCTA TCCAGCAATC CTCCTTCGCC GGCCAAACGG CCCTCAAGCC CTCCAACGAC CTCCTCCGCA AGGTTGGTGT TTCCGGTGGT GGCCGTGTGA CCATGCGTCG TACCGTCAAG TCTACTCCTC AAAGCATCTG GTATGGACCA GACCGTCCCA AATACTTGGG ACCATTCTCG GAGAACACAC CATCGTACTT AACCGGAGAA TACCCCGGAG ACTACGGCTG GGACACCGCT GGACTCTCAG CTGACCCGGA GACATTCGCT AAGAACCGTG AGCTTGAGGT AATCCACAGC AGATGGGCTA TGTTGGGTGC TCTTGGCTGC ACATTCCCTG AGATTCTCTC CAAGAACGGT GTTAAATTCG GAGAAGCCGT GTGGTTCAAG GCGGGTTCTC AGATCTTCTC AGAAGGAGGT CTTGATTACC TCGGAAACCC TAACTTGATC CACGCGCAAA GCATCTTAGC CATCTGGGCT ACTCAAGTTG TGCTCATGGG CTTCATTGAA GGCTACAGAA TCGGAGGTGG ACCACTCGGA GAAGGGCTTG ACCCACTTTA CCCCGGAGGT GCGTTCGACC CTTTGAACTT GGCAGAGGAT CCAGAGGCCT TCTCTGAGCT GAAGGTGAAG GAGCTCAAGA ACGGTCGTCT TGCCATGTTC TCTATGTTTG GATTCTTTGT CCAAGCCATT GTCACTGGTA AAGGTCCCAT TGAGAACTTG TTTGATCACT TGGCTGATCC TGTGGCTAAC AACGCCTGGG CTTATGCTAC TAACTTTGTC CCCGGAAAGT AATTGTCATA TGTATTTCCT TCATAATCT 
Length859
Protein Sequence
Protein Residue
Map Locationscaffold_3: 12874459.. 12875394
Download Sequence
A.thaliana
AGI-codeAT2G05100.1
Descriptionphotosystem II light harvesting complex gene 2.1
TAIR curator summaryLhcb2.1 protein encoding a subunit of the light harvesting complex II. Member of a gene family with high degree of sequence similarity. Initially LHCB2.3 was considered as a separate gene but appears to be an allele of LHCB2.1.
Alias[LHCB2][LHCB2.1][LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2][photosystem II light harvesting complex gene 2.1]
Gene coexpression
MR
MR Locus Description
1 Ahg495512 light-harvesting chlorophyll B-binding protein 3
2 Ahg473203 chlorophyll A/B-binding protein 2
3 Ahg482403 light-harvesting chlorophyll-protein complex II subunit B1
4.24264 Ahg473204 chlorophyll A/B binding protein 1
4.47214 Ahg485112 light-harvesting chlorophyll-protein complex I subunit A4
4.47214 Ahg478197 light harvesting complex photosystem II
7 Ahg482401 photosystem II light harvesting complex gene B1B2
7.07107 Ahg943375 Auxin-responsive GH3 family protein
14.6969 Ahg485905 photosystem I light harvesting complex gene 1
15.2315 Ahg471781 light harvesting complex photosystem II subunit 6
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression