Detail



ID : Ahg932610

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|932610|scaffold_400598.1
Sequence
CCAATGGTGA GGTGAAAGAA ATGAATGAAG ACACTAATAA TCCTCAAACT TCAGAGTCCA ATGCACGTCG TATTATAATC AGCTCTAATA TAACCGATCC ATGGAAGTCT GTGTCTGACG AGGAGAAGAG AAACACAGGA TTTCTCAGAA TCGGATTGGA TGCTTCAAAG CTAATAAGTA GAGGAAGAAC AACAGGTTTC AAACCATACA AAAGATGTTC CATGGAAGCC AAAGAAAGTG GAATCCTCAA CAGCAATCCT ATCATTCATG TGGAACAGAA AGACCCCAAA CGGATGCGGC TGAAAACTCA AGCTTCGACA TGAAACTCTA TTTTCATCTC TTCTG 
Length345
Protein Sequence
Protein Residue
Map Locationscaffold_4: 3297801.. 3298368
Download Sequence
A.thaliana
AGI-codeAT2G46830.1
Descriptioncircadian clock associated 1
TAIR curator summaryEncodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.
Alias[AtCCA1][CCA1][circadian clock associated 1]
Gene coexpression
MR
MR Locus Description
6.40312 Ahg894590
12.1655 Virus1613
14.6969 Virus1122
15.0997 Virus3719
17.8885 Virus1635
20.0749 Ahg912961
22.7596 Virus3754
25.4951 Ahg891034 histone H2A 4
26.8328 Ahg922543 Putative membrane lipoprotein
27.4955 Virus1870
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression