| Annotation |
|---|
| Description | jgi|Araly1|933614|scaffold_401602.1 |
| Sequence |
CTCTGCTTTA TTTGTTAGTA TCCATGATCT TCTTTAGTAA CCAATACTCA GCTAATTTTG TTTTGACTAT GCAGTTACTT TGTTTCACTG AGAAAAATGG CGACTGGAGT ATTGCCAGCT CCTGTTTCCG GGGTTCGAAA CTCGGGTTCG GTAAAAGTAT GAATCTTGTG AGAATTTGTG ATTTGACGAG TCTAAGATCT GCTAGAAGAA GAGTTTCCGT TATCCGGAAT TCAAACCAAG GCTCCGATTT AGCCGAGCTT CAACCTGCAT CAGAAGGAAG CCCTCTCTTA TGCATAAGAG ATTCATTCAA AAAATTCATC TTTTAAGAGT TTTTCTCGAG TATCAT |
| Length | 346 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_4: 13798036.. 13798381 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G60600.1 |
| Description | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase |
| TAIR curator summary | Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP+ reductase. |
| Alias | [CLB4][CSB3][GCPE][HDS][ISPG][CHLOROPLAST BIOGENESIS 4][CONSTITUTIVE SUBTILISIN 3][4-hydroxy-3-methylbut-2-enyl diphosphate synthase] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 21.3073 |
Ahg496002 | Undecaprenyl pyrophosphate synthetase family protein |
| 26 |
Ahg472391 | Calcium-binding EF-hand family protein |
| 26.6833 |
Ahg485004 | heat shock protein 17.4 |
| 31.3688 |
Ahg945273 | heat shock protein 21 |
| 47.0638 |
Ahg919476 | |
| 54.4794 |
Ahg907188 | heat shock protein 90.1 |
| 60.7947 |
Ahg894458 | Cytochrome bd ubiquinol oxidase, 14kDa subunit |
| 60.7947 |
Ahg495334 | heat shock protein 90.1 |
| 66.6333 |
Ahg900606 | heat shock protein 90.1 |
| 70.3136 |
Ahg351839 | |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
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| The four seasons |
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| Growth Chamber expression |
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