Detail



ID : Ahg934108

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|934108|scaffold_402096.1
Sequence
GCTTTCATAC GATGATCTTC ATATGGCGAT CATCGACACA AACTCCAGCC GTTGGATCCC TCACAACCTT CTCTTCCTTC TCCTCTTGCT ATTGCTCCAG TCAGTACCGT ATGGATCCGG TCAGACCACA CCGCCCGGAA CTACACAAAC GAAAGCCAAC GATCCAATTG TTGTAGTGAT AACGGTTATG TTTGTGGTGA TCTTCTTCAT GGTCTTCGGT TCCATCTTCT GTCGTCGAAG CAACGCGCGG TTTTACTCAC GTTCTTCTGT TTTCCGATCC ACCGACGCAG ACGCGGAGTC CCGCGTGGTG AGGATCAGAA GGTCGACGGC GCGTGGGCTC GAGGCGGAGG CTATAGAATC TTTCCCGACG TTTCTTTACT CGGAGGTGAA GGCGGTGAGG ATCGGTAAAG GTGGTGTGGA GTGTGCGGTT TGTCTCTGTG AATTCGAAGA CGACGAAACG CTGCGTTTGA TGCCTCCTTG TTGCCACGTG TTTCACGTCG ATTGCGTTGA CGTCTGGCTC TCAGAACACT CCACGTGTCC TCTCTGTAGA GCGGATCTTG TCCTCAGCCA ACATGGTGAC GACGACGACA GTACTGAAAG CTACTCGGGT ACAGATCCGG GTACGATTTC GTCGGGTACG GATCCTGAGA GAGGAATGGT TTTGGAATCT TCGGACGCGC ATTTGCTGGA TGGAGTGACG TGGACCAATA GTAACATAAC GCCTCGGTCA AAGTCAACGG GATTATCCAG CTGGCGTATA ACCGGAATTT TGTTCCCGAG ATCTCATTCG ACCGGACATT CGTTGGTTCA ACCGGCTGGA AATCTAGACC GGTTTACGTT GACCTTACCT GATGATGTAC GACGGCAATT GATGAAGACA TCGAGGACGA TGGGACACGT GGCGTTATTA CCTCAGGCGA GGAGTTCACG GAGCGGTTAC AGAAGCGGTA GCGTCGGGAG CGAGAGAAGC GTTTTTACGT ACGGACGGAA GAGTAATAAT AACAATCGAC GGCTGCATTC GCTGTCTTTT TCATTCTCTT TCCGGAGTGG TTCTGTGCGG TCTACTTTCT CCGGAGATGC GCCAAAGAAT CTTCCGACAT CTGTCGAAGC TGGTGAACGG TCTTTCGAAC GGCTCCGACC AGATGATCGA GTCGAGGCGA TGGCGCAGCC TGGAACCGAG ACAAAAGCAA GCGACCTAGC CATCCTAGTA ATCACTCTTA TACTCTTCGC GATCTTCGTC GTTGGTTTGG CTTCGGTTTG CTTTCGCTGG ACCTCTCGCC AGTTTTACTC GCAAGAATCC ACCAACCCGT TCACTGACTC CGACGTTGAA TCCCGTACGA GTATTACGGC GGCGCGTGGG CTGGACGAGG CTATCATCAA CTCATTCCCG ACGTTTCTCT ACTCGGAGGT GAAGGAGCGT AGGATCGGGA TAGGTGGAGT CGAGTGTGCG GTGTGTATCT GTGAGTTCGA AGACCATGAA ACGCTGCGTT TGATGCCTGA GTGTTGCCAC GTGTTTCACG TTGATTGTGT AAGTGTCTGG CTCTCTGATC ACTCCACGTG TCCGCTCTGT CGTGTGGATC TTTTCTTACA ACCGGGTGAG AGGAGCTACT TGAATCCGGA TCCGGATCCT GTAGAATCTA CAAACTCGCA TCTGTTTGAT GGTGTGACGT GGACCAATAG GAACAGACCG TCTCGGTCAT GGTCAACGAG ATTGTCTCAA TGTCGAGTCT CCCAGATATT AATCTCAAGA TCGCACTCGA CCGGGCATTC TGTGGTTCAA CCTTTAGATA ATTTAGACCG GTTTACGCTT CGGTTACCAG AAGAAGTCCA GAGGCAACTG ACAAAGAAGA CGGTGGACCA TGCGGCATTA CCTCATGCAA GGAGCTCGCG GCGCGGTTAC AGAAGCAGAA GTGCCGGAAG CAGAAGCGAT TGGAGTGTCT TCTCATACCA ACAGAATAAC TATAACAATA ATCGGCGGAT ACATTCCTTC TCTGATTGTG CATGGTCCAC CTCCTGTGGC GGAGAAGCGG TGGCTCAGCC GAAGGATCTT TCGGGATCGA TCGATTCCCG CCGAATATCA TTTGAACGAT TCCAGCCAGA TGATCAAGTG TAGATAGGCA ATTTTTTTGG CGT 
Length2133
Protein Sequence
Protein Residue
Map Locationscaffold_4: 15756341.. 15759247
Download Sequence
A.thaliana
AGI-codeAT2G35000.1
DescriptionRING/U-box superfamily protein
TAIR curator summaryE3 ligase-like protein induced by chitin oligomers.
Alias[ATL9][Arabidopsis toxicos en levadura 9]
Gene coexpression
MR
MR Locus Description
13.4164 Ahg930930
20.0499 Ahg477570 alpha/beta-Hydrolases superfamily protein
38.9743 Ahg477889 Heavy metal transport/detoxification superfamily protein
53.7401 Ahg952326 Glutaredoxin family protein
59.8498 Ahg347073
66.2873 Ahg919569 arogenate dehydratase 6
67.6461 Ahg337235
95.4777 Ahg930767
97.2265 Ahg474562
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression