Detail


ID : Ahg935955

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|935955|scaffold_500146.1
Sequence
TTTGTATCTT AATCTCTTAA AAAATGAAGC TCTCTCTGCG TTTGATCTCA GCCCTTCTCC TCTCAGTCAT GCTCCTCTTT GCCACAGGAA TGGGTCCTGT GGAAGCAAGA ACGTGTGAGT CACCAAGTAA CAAGTTCCAA GGAGTTTGTC TCAACTCACA GAGCTGTGCC AAAGCTTGCC CTAGCGAAGG TTTTTCAGGC GGTCGATGTA GTAGTCTCCG TTGCTACTGC TCCAAAGCCT GCTAATTTAT CAACAAATCA TTTAT
Length265
Protein Sequence
Protein Residue
Map Locationscaffold_5: 714945.. 715417
Download Sequence
A.thaliana
AGI-codeAT2G02140.1
Descriptionlow-molecular-weight cysteine-rich 72
TAIR curator summaryPredicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
Alias[LCR72][PDF2.6][low-molecular-weight cysteine-rich 72]
Gene coexpression
MR
MR Locus Description
1.41421 Virus0821
2 Ahg942086
2 Ahg314367 transposable element gene
2.44949 Ahg902409 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
3.16228 Ahg928434 DNA-binding enhancer protein-related
3.4641 Ahg317104
4.58258 Ahg949083
4.89898 Ahg913003
6.48074 Virus1151
8.12404 Virus1908
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression