| Annotation |
|---|
| Description | jgi|Araly1|938917|scaffold_503108.1 |
| Sequence |
GGTGTCTTTA CAGATCTGAC ATGGAACAAG TGTTTGCTGA TTGGAATTTT GAAGATAATT TTCACATGTC CACTAATAAA AGATCAATCA GACCAGAAGA TGAACTAGTG GAGCTACTGT GGAGAGATGG TAAAGTGGTT TTACAAAGCC AAGGTCGTAG AGAACCGTCA GTTCAAACCC ACAAACAAGA ATCCCTAAGA AAACCCAACA ACATTTTTCT TGATAACCAA GAAACAGTAC AAAAGCTTAG CAACTCTGTT CTTCAGGATC AAGAAACCGT CTCCTGGATC AATTACCCTC CCGATGACGT CATGGACCCT TTTGAATCCG AGTTCTCCTC TCATTTCTTC TCTTCGATCG ATCACGTCCA CGGTCCAGAG AAACCACGAA CGATCGAAGA GACAGTTAAG CATGAGGCTC AAGCCATGGC TCCTCCTAAG TTGCGATCCT CTGTTATAAC AGTCGGACCA AGCCATTGCG GTAGCAACCA GTCTACCAAT ATTCATCAAG TGACTACACT TCCGGTATCT ATGAGTGATA GAACCAAGAA CGTCGAAGAA AGACTTGACA CTTCGTCCGG TGGCTCCTCC GGTTGCAGCT ACGGAAGGAA CAACAAAGAA ACCGTTAGTG GAAGAAGCGT AACCATTGAC CGTAAAAGAA AACATGTAAT GGATGCTGAT CAGGAATCTG TGTCTCAATC AGATATAGGT TTGACCTCAA CCGATGATCA AGCCATGGGT AACAAATCGA GCCAGCGGTC AGGATCTACT CGAAGAAGCC GTGCAGCTGA AGTTCATAAT CTCTCAGAAA GGAGGAGGAG AGACCGGATC AATGAAAGAA TGAAAGCTCT TCAAGAACTC ATACCTCACT GCAGCAAGAC AGATAAAGCT TCGATATTGG ATGAAGCAAT TGATTACTTG AAATCACTTC AAATGCAACT CCAAGTGATG TGGATGGGAA GTGGAATGGC GGCAGCGGCT GCAGCAGCAA CTACTCCGAT GATGTTTCCT GGCGTACAAT CATCTCCATA CATTAATCAG ATGGCTATGC AGAGTCAGAT GCAATTGCCT CAATTCCCGG TTATGAACCG GTCCGCTCCA CAGAATAATC CCGGTTTAGT ATGCCAAAAC CCGGTACAGT TTCAGCTCCA AGCACATAAC CAAATCTTAT CGGAGCAGCT CGCTAGGTAC ATGGGCGGGT TTCCCCAGAT GCCGCCGGCG GCGAATCAGG CCGTGCAACA GCCAGCAGAC ATATTGGGAT TTGGATCTCC GGCGGGACCG CAAAGTCAAC TGTCGGCACC GGCGACCACC GACAGTCTTC ATATTGGTAA AATAGCCTGA CGTGGCATAT AATTTTCCTC |
| Length | 1360 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 18125175.. 18127002 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G59060.2 |
| Description | phytochrome interacting factor 3-like 6 |
| TAIR curator summary | Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B. |
| Alias | [PIF5][PIL6][PHYTOCHROME-INTERACTING FACTOR 5][phytochrome interacting factor 3-like 6] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4 |
Ahg496615 | dentin sialophosphoprotein-related |
| 4.47214 |
Ahg476235 | MYB-like 2 |
| 5.47723 |
Ahg897595 | cycling DOF factor 3 |
| 7.93725 |
Ahg483401 | phytochrome interacting factor 4 |
| 9.59166 |
Ahg946256 | nine-cis-epoxycarotenoid dioxygenase 4 |
| 10.5357 |
Ahg943375 | Auxin-responsive GH3 family protein |
| 11.225 |
Ahg470616 | B-box zinc finger family protein |
| 11.4018 |
Ahg472050 | Homeodomain-like superfamily protein |
| 15.2971 |
Ahg921839 | Protein of unknown function (DUF579) |
| 20.7123 |
Ahg950837 | OBF binding protein 4 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|