| Annotation |
|---|
| Description | jgi|Araly1|940828|scaffold_601372.1 |
| Sequence |
ATCTATCATC AGCCGCGAAA ATGGCTTCGC TTGTGTATTC TCCATTCACT CTATCCACTT CTAAAGCAGA GCATCTCTCT TCGCTCTCTA ACAGTACCAA ACATTCTTTC CTCCGGAAGA AACACAGATC GTCAAAACCA GCTCTATCCT TCTTCAAGGT GAAATCTGCG GTATCTGGAA ACGGCCTCTT CACACAGACG AACCCGGAGG TCCGGCGTAT AGTTCCGATC AAGAGAGACA ACGTTCCGAC GGTGAAAATC GTCTACGTTG TCCTTGAGGC TCAGTACCAG TCTTCTCTCA CTGAGGCCGT GCAATCTCTC AACAAGACTT CGAGATTCGC ATCCTACGAA GTGGTTGGAT ACTTGGTAGA GGAGCTTCGA GACAAGAACA CGTACAACAA CTTCTGCGAA GACCTTAAAG ACGCCAACAT CTTCATTGGT TCTCTGATCT TCGTCGAGGA ATTGGCGATC AAAGTTAAAG ATGCGGTGGA GAAGGAGAGA GACAGGATGG ACGCAGTTCT TGTCTTCCCT TCAATGCCTG AGGTAATGAG ACTTAACAAA CTCGGATCTT TCAGTATGTC TCAATTGGGT CAGTCAAAGT CTCCGTTTTT CCAACTCTTC AAGAGGAAGA AACAAGGCTC TGCTGGTTTT GCCGATAGTA TGTTGAAGCT TGTTAGGACA TTGCCTAAGG TTTTGAAGTA CTTACCTAGT GACAAGGCTC AAGATGCTCG TCTCTACATC TTGAGTTTAC AGTTTTGGCT TGGAGGGTCT CCTGATAATC TCCAGAATTT CGTTAAGATG ATTTCCGGAT CTTATGTTCC GGCGTTGAAA GGTGTCAAAA TCGAGTATTC GGATCCGGTT TTGTTCTTGG ACACTGGAAT TTGGCATCCA CTTGCTCCCA CCATGTACGA TGATGTGAAG GAATACTGGA ACTGGTATGA CACGAGAAGG GACACCAATG ACTCACTCAA GAGGAAAGAT GCAACGGTTG TTGGTTTGGT CTTGCAGAGG AGTCACATTG TGACTGGTGA TGATAGTCAC TATGTGGCTG TTATCATGGA GCTTGAGGCT AGAGGCGCTA AGGTTGTTCC TATATTCGCA GGAGGATTGG ATTTCTCTGG TCCAGTTGAG AAATATTTCG TAGATCCGGT GTCCAAACAG CCCATCATAA ACTCTGCTGT CTCCTTGACC GGCTTTGCTC TAGTTGGTGG ACCTGCAAGG CAGGATCATC CGAGGGCTAT CGAAGCCCTG AAGAAGCTCG ATGTTCCTTA CCTTGTGGCA GTACCACTGG TGTTCCAGAC GACAGAGGAA TGGCTAAACA GCACACTTGG TCTGCATCCC ATCCAGGTGG CTCTGCAGGT TGCCCTCCCT GAGCTTGATG GAGCCATGGA GCCAATCGTT TTCGCTGGTC GTGACCCTAG AACAGGGAAG TCACATGCTC TCCACAAAAG AGTTGAGCAA CTCTGCATCA GGGCGATTCG ATGGGGTGAG CTCAAAAGAA AAACTAAGGC AGAGAAGAAG CTGGCAATCA CTGTTTTCAG TTTCCCACCT GATAAAGGTA ATGTAGGGAC TGCAGCTTAC CTCAACGTGT TTGCTTCCAT CTTCTCGGTC CTAAAAGACC TCAAGAGAGA TGGCTACAAT GTTGAGGGCC TTCCTGAGAA TGCAGAGACT CTTATTGAAG AAATCATTCA TGACAAGGAG GCTCAGTTCA GCAGTCCTAA TCTCAATGTA GCTTACAAAA TGGGAGTCCG CGAGTACCAA GACCTCACTC CTTATGCAAA TGCCCTGGAA GAAAACTGGG GAAAACCTCC GGGGAACCTT AACTCAGATG GAGAGAATCT TCTTGTCTAT GGAAAAGAGT ACGGTAATGT TTTCATCGGA GTCCAACCGA CATTTGGGTA TGAAGGTGAT CCCATGAGGC TGCTTTTCTC CAAGTCAGCA AGTCCTCATC ACGGTTTTGC TGCTTACTAC TCTTACGTAG AAAAGATCTT CAAAGCTGAT GCTGTCCTTC ATTTTGGAAC ACATGGTTCA CTCGAGTTTA TGCCAGGGAA GCAAGTGGGA ATGAGCGACG CTTGCTTTCC AGACAGTCTT ATCGGTAACA TTCCCAATGT GTACTACTAC GCAGCTAACA ATCCCTCTGA AGCTACCATC GCAAAGAGGA GAAGTTACGC CAACACCATC AGTTATTTGA CTCCTCCAGC TGAGAATGCT GGTCTATACA AAGGGCTGAA GCAGTTGAGC GAGCTGATAT CGTCGTACCA GTCTCTGAAG GACACGGGGA GAGGTCCACA GATTGTCAGT TCCATCATCA GCACAGCTAA GCAATGTAAT CTTGATAAGG ATGTGGACCT TCCAGATGAA GGGGCGGAGT TGTCACCTAA TGACAGGGAT TCTGTGGTTG GAAAAGTGTA TTCCAAGATT ATGGAGATTG AATCAAGGCT TTTGCCGTGC GGGCTTCACG TCATTGGAGA GCCTCCATCC GCCATGGAAG CTGTAGCCAC ACTGGTCAAC ATTGCTGCTC TAGATCGCCC GGAGGATGAG ATTTCAGCTC TTCCTTCTAT ATTAGCTGAG TGTGTTGGAA GGGAGATAGA GGATGTTTAC AGAGGAAGTG ACAAGGGTAT CTTGAGCGAT GTAGAGCTTC TCAAAGAGAT CACTGATGCC TCGCGTGGCG CGGTTTCCGC CTTTGTGGAA AAAACAACAA ATAGCAAAGG ACAGGTGGTG GATGTGTCTG ACAAGCTTAC CTCGCTTCTC GGGTTTGGAA TCAATGAGCC ATGGGTTGAG TATTTGTCCA ACACCAAGTT TTACCGGGCG AACAGAGATA AGCTCAGAAC AGTGTTTGGT TTCCTTGGAG AGTGCCTGAA GTTGGTGGTC ATGGACAACG AACTAGGGAG TCTAATGCAA GCTTTGGAAG GGAAGTACGT TGAGCCAGGA CCCGGAGGTG ATCCCATCAG AAACCCCAAG GTCTTACCAA CCGGTAAAAA CATTCATGCC TTAGATCCTC AGGCTATTCC CACAACAGCA GCAATGGCTA GTGCCAAGAT TGTGGTCGAG AGGTTGGTAG AGAGACAGAA GCTCGAAAAC GAAGGGAAAT ATCCCGAGAC AATCGCCCTT GTTCTCTGGG GAACTGACAA CATCAAGACA TATGGGGAGT CTCTTGGGCA GGTTCTTTGG ATGATTGGTG TGAGACCAAT TGCTGATACT TTTGGAAGAG TGAACCGTGT CGAGCCTGTG AGCTTAGAAG AACTAGGAAG GCCAAGGATC GATGTAGTTG TTAACTGCTC AGGGGTGTTC CGTGATCTCT TTATCAATCA GATGAACCTT CTTGACCGAG CTATCAAGAT GGTGGCTGAG CTAGATGAGC CTGTAGAGCA AAACTTTGTG AGAAAACACG CGTTGGAACA AGCAGAGGCG CTTGGCATTG ATATTAGAGA GGCAGCGACA AGAGTTTTCT CAAACGCTTC AGGGTCATAC TCAGCAAACA TCAGTCTTGC TGTTGAAAAC TCTTCATGGA ACGATGAGAA ACAGCTTCAG GACATGTACT TGAGCCGCAA ATCGTTTGCG TTTGATAGTG ATGCTCCTGG AGCAGGAATG GCTGAGAAGA AGCAGGTCTT TGAGATGGCT CTTAGCACTG CAGAAGTCAC CTTCCAGAAC CTAGATTCTT CAGAGATTTC CTTGACTGAT GTGAGCCACT ACTTCGACTC TGACCCGACA AATCTAGTTC AGAGTTTGAG GAAGGATAAG AAGAAACCGA GCTCTTACAT TGCTGATACA ACAACTGCAA ACGCACAGGT GAGGACTCTA TCTGAGACAG TGAGGCTGGA CGCAAGAACG AAGCTGCTGA ATCCAAAGTG GTACGAAGGA ATGATGTCAA GTGGATATGA AGGAGTTCGT GAGATAGAGA AGAGACTGTC AAACACTGTG GGATGGAGTG CAACGTCCGG TCAAGTAGAC AATTGGGTGT ACGAGGAGGC CAACTCAACT TTCATCCAAG ATGAGGAGAT GCTTAACCGT CTCATGAACA CCAATCCCAA CTCCTTCAGG AAAATGCTTC AGACTTTCTT GGAGGCCAAT GGTCGCGGCT ACTGGGATAC TTCCGCTGAA AACATCGAGA AGCTCAAGGA ATTGTACTCG CAGGTGGAAG ACAAGATCGA AGGGATTGAT AGATAAACTA AGCCTATCTT CTTGTAAATG AACTCAAACT TTATTTTTTT GTGTATTACA GTATCCTACC AACGACATTA TCTCTCTGTG AATAAGAGAA TGTTTTGGCT GACATTTTCT GACTTTATAT GAATGTTGTG GCGTTTCTTC |
| Length | 4310 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 5290110.. 5294819 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G13630.1 |
| Description | magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) |
| TAIR curator summary | Encodes magnesium chelatase involved in plastid-to-nucleus signal transduction. |
| Alias | [ABAR][CCH][CCH1][CHLH][GUN5][ABA-BINDING PROTEIN][CONDITIONAL CHLORINA][H SUBUNIT OF MG-CHELATASE][GENOMES UNCOUPLED 5] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1 |
Ahg476582 | Pyridine nucleotide-disulphide oxidoreductase family protein |
| 3.4641 |
Ahg486137 | dicarboxylate diiron protein, putative (Crd1) |
| 5.83095 |
Ahg481283 | aldehyde dehydrogenase 11A3 |
| 6.9282 |
Ahg951584 | PS II oxygen-evolving complex 1 |
| 6.9282 |
Ahg473204 | chlorophyll A/B binding protein 1 |
| 7.34847 |
Ahg475878 | photosystem II BY |
| 7.87401 |
Ahg475445 | Glutamyl-tRNA reductase family protein |
| 8.66025 |
Ahg489877 | light harvesting complex of photosystem II 5 |
| 9.64365 |
Ahg495239 | 2 iron, 2 sulfur cluster binding |
| 10.9545 |
Ahg475805 | ribulose bisphosphate carboxylase small chain 1A |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|