Detail



ID : Ahg943767

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|943767|scaffold_604311.1
Sequence
CGCTTCCCAC CGCCAGAATT ATGAATCCCG AGTATGACTA TCTTTTCAAG CTCCTGCTTA TCGGAGATTC TGGTGTTGGG AAATCATGTC TACTCTTAAG ATTTGCTGAT GATTCGTACA TAGAGAGTTA CATAAGCACT ATTGGAGTTG ATTTTAAAAT TCGGACTGTC GAACAAGATG GGAAGACGGT TAAGCTCCAA ATTTGGGACA CTGCTGGTCA AGAGCGGTTC AGGACAATTA CCAGCAGTTA CTACCGGGGG GCACATGGAA TCATAATTGT TTATGACGTC ACAGACGAAG AGAGCTTCAA TAACGTGAAG CAGTGGTTGA GTGAAATCGA TCGTTATGCG AGTGACAGCG TGAACAAACT CTTGGTTGGG AACAAATGTG ATCTGGCTGC AAACAGAGCA GTTCCATATG AAACAGCCAA GGCTTTTGCG GATGAAATTG GAATTCCTTT TATGGAGACG AGTGCAAAAG ATGCCACCAA CGTGGAACAG GCTTTCATGG CCATGGCAGC GTCCATCAAA GACAGAATGG CAAGTCAACC AGCTGCGAAC AATGCAAGAC CGCCAACGGT GCAGATCAGA GGACAGCCAG TTCCCCAGAA GAACGGTTGC TGCTCGTCTT GAAATTATAT TATGATATTA GT 
Length652
Protein Sequence
Protein Residue
Map Locationscaffold_6: 23503635.. 23505621
Download Sequence
A.thaliana
AGI-codeAT1G02130.1
DescriptionRAS 5
TAIR curator summaryBelongs to the Rab1 GTPase subfamily. This small GTP-binding protein is required in ER to Golgi transportation.
Alias[ARA-5][ARA5][ATRAB1B][ATRABD2A][RA-5][RABD2A][RAS 5][ARABIDOPSIS RAS 5][ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B][ARABIDOPSIS THALIANA RAB D2A][RAB D2A]
Gene coexpression
MR
MR Locus Description
14.2478 Ahg477582 NAD(P)-binding Rossmann-fold superfamily protein
16.4317 Ahg496128 Histone superfamily protein
23.8747 Ahg950418 Galactose mutarotase-like superfamily protein
25.923 Ahg495325 conserved peptide upstream open reading frame 14
30.1496 Ahg473046 dormancy-associated protein-like 1
30.3315 Ahg320991 alpha/beta-Hydrolases superfamily protein
39.6611 Ahg473005 B-box type zinc finger protein with CCT domain
40.4969 Ahg327414 methionine sulfoxide reductase B3
44.2945 Ahg488784 BTB-POZ and MATH domain 1
50.6754 Ahg488204 pheophytinase
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression