Detail



ID : Ahg949247

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|949247|scaffold_801134.1
Sequence
TACATTTACA TAGATCAACC ATGAAGCTTC TTGGACTCTG CTTAGTTCTT CTATTAGCGG TGGTGACTTG CAAAGCTGAA GAGATTACGT GCGAAGAGAC CAAGCCATTC ACATGTAACC AAACTGATCG TTTCAACAGA AAACATTTCG ATGATGACTT CATCTTCGGT GTTGCATCCT CTGCGTACCA GGCATGTGCT AAAGGTCGTG GACTTAACGT TTGGGATGAG AAAGGAGGAC CCGATCTAGG GAATGGAGAC AACACTTGTG GATCATATGA GCACTGGCAG AAAGATATAG ACGTAATGAC CGAACTCGGT GTTGACGGCT ATAGATTCTC GCTTGCGTGG TCAAGAATCA TTCCGAGAGG AAAGGTGAAG AGGGGAATCA ACGAAGCAGG GGTTAAGTAC TATAACGAGC TCATAGATGG CCTCCTAGAG AAGAATATAA CTCCTTTCGT TACCCTCTTC CATTGGGACC TTCCTCAAGT TCTACAAGAT GAGTATGAAG GTTTTTTGCA CCGCGATATC ATGTATGTTA TTGATGTTAA GAACTGGATC ACGATCAAGC AGCTCTACAC AGTGCCTACA AGAGGTTATG CAATGGGAAC AGGTGCACCC GGTCGATGTT CTTATTGGCT TAATAAAGAT CGTTACGCCG GAGATTCTGG AAGAGAACCC TATATCGTTG CGCACAACCA GCTTCTTGCT CATGCCGAAG TCGTCGATCT TTACAGGAAA AAATATAAGC CAAAACAAGG AGGACAGATT GGAGTTGTGA TGATAACTAG ATGGTTTATT CCATATGATA GCACTGAAGC CAACAAAAAG GCAACTGAGA GGAACAAAGA GTTCTTCTTG GGATGGTTTA TGGAGCCGCT AACAAAAGGT AAATACCCAG ACATCATGAG AAAACTTGTG GGTCGACGGC TTCTAAACTT CAGTGAAAGA GAAGCCAAAC TTGTGAAGGG TTCATATGAT TTTCTTGGTA TCAACTATTA CCAAACTCAG TACGTCTATG CCATTCCTGC AAATCCTCCG AATAGACTCA CCGTCATGAA TGACTCACTT TCAGCATACT CATATGAAAA TAAAGATGGT CCCATAGGTC CATGGTTATT ACCATCCAAG AGGAATGTAA ACGTGTTGGA GCACTTCGAA ACTAAGTACG GAAACCCTTT AGTCTATATC ACCGAGAACG GATATAATAG CCCCGGTGGT AACACAACTG CCCATGAGGT TATAGCTGAT TACGAGCGGA TTGATTATCT CTGCAGTCAT CTCTGTTTTC TCCGTAAGGC CATCAAGGAG TCTGGTTGCA ACGTGAAAGG ATACTTTGCT TGGTCTCTTG GAGATAATTA TGAATTCGGC AAAGGCTTTA CCGTGAGATA CGGACTCAGT TACGTTGATT TCACTAATAT CACTGCTGAT AGAGTCCTCA AAACTTCTGG AAAATGGTAC AAGCAGTTCT TAAACGGTAC AACCAAGATC CCTGATGAGA ACCAAAATTT CCTCCGCTCA AGGCTCTTCT TCGAGAACCG TGATCAAAAG AAAGTCGCAG ATACATAAGA CAAAAAACGA GTTTATGGT 
Length1589
Protein Sequence
Protein Residue
Map Locationscaffold_8: 10986279.. 10989022
Download Sequence
A.thaliana
AGI-codeAT5G48375.1
Descriptionthioglucoside glucosidase 3
TAIR curator summaryIs a myrosinase pseudogene that codes for a truncated and frameshifted protein. Although TGG3 apparently is a pseudogene, its mRNA is expressed specifically in stamen and petal according to RT-PCR analysis. Western analysis shows no band of the size expected for a TGG3 protein.
Alias[BGLU39][TGG3][BETA GLUCOSIDASE 39][thioglucoside glucosidase 3]
Gene coexpression
MR
MR Locus Description
1.41421 Ahg326853 glucoside glucohydrolase 2
4 Ahg489446 thioglucoside glucohydrolase 1
8.48528 Ahg472662 MLP-like protein 423
9.38083 Ahg486566 FASCICLIN-like arabinogalactan-protein 10
14.1421 Ahg477690 Li-tolerant lipase 1
16.0935 Ahg927503 Leucine-rich repeat (LRR) family protein
25.4951 Ahg495241 subtilase 1.3
26.2679 Ahg926050
26.8328 Ahg470654 Fatty acid desaturase family protein
26.8328 Ahg485285 IQ-domain 21
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression