| Annotation |
|---|
| Description | jgi|Araly1|949785|scaffold_801672.1 |
| Sequence |
GACGGATCTG GAGAATTACG ATGCGAACTC GATTTCTCAA CATCGATTAC TTCTCTACTC CATCTTCTCA GGTATTTGAA ACCCTAGGCT TCCTTAATCT TCCGGCTCCT GATAATTTTC CGGGACCTAT AGTCTACGAC GGAGAAGAAG ACCGTCTCCG ATTTGGCTCT GTCGAAAATG TCTGTCTCCC AATCGGGAAT TTTACTATTG AAGCTGCTTT GTCGAAGTTC CTTTCCGACG TGGTTCCCGA TTGCGTTAGT GTGGACTATG GAGTTTTTGA AATTGATGAT TCTTCCCTCG GAGATTATTT CTCAGACGAG AAGAATGACG GAGATGCCAT TGAGGACAAA GCTGTATTTA ACATTATGGA GTTGGAGACT CCGGAGTTGG ATTTTGAAAT GGTTAAATAT GTTGAATTAG ATACTATCTT ACAGAACTCA AATGACATCC ACCAAAGGAT TTATTCTGTT GATTACATTT CTTCTGATTA CTTCACAGAG AACAATACTT CGGTAGCAGA AAATGAATGC TCTAGCAAGA ATCAACCATG GTTCAAAGAT GCCAGATTTC CCCTTCTAGA AGTGGATGAA GTAAACTTGA GAGAACTATC GAGCTTATCT ACGCTTGATA AAGTATTTAC TGTTCTTGAA ACAATTGAAC CCCAAGATAA GAACGCAGCG AGTTCTCTCA TTATCAATTC TAAGGAGCTT ATAGGCTCTA AGGGTTATGA TCTATTGGAT ATCCTCTCTA CGGATTGCTA TTTGAACAAA AGTGGTCAAT CTGATGTGGT GCCAGAGGAT GAATTTTCTG AAGTGGATTT AGTGAATATC CTGGAAATAT CAAATGCTGA GGAAAACTTT CTGTTTGAAC AACAAGGAAA GCTGGCTCTC CCAGTAACTT TTGAGGAATT TCAGATCCTG GATGTGGAAA TATCTGATGT TTTTGATATC TTCCTTTGTC TTCTAAAAGC CATTGAACCA GAAATATGTT ATGGGATGTT TAGTAAAGAG ATGAACTTCA AGAATTTCGA TGAATTAGTA GTCAGTTCCG AACTTGCCTT CACAGATGAT GCCTTCAAGT CTCTGCCTAC TCCTATTTTA CATGATTATG AGATGACAAG ATCTCTGGAT CTCATTTATG AGGATGTTTT GTCAAAGATC AAGCCTCAAT CCTTGTCTGC TTCAAATGAC ATATACTTGC CCTGGAACCT TCTTGAGGAA AGAAACCACA ACCATTGTGA TTATCCGTTT GAAGAAATAG TTACACTCAA CATTGATTTT AAGTGGGAAT CTTCAGAAGG AGACAAATGG GTTTATGATT TTATATTCTC TGAAGATGCT TTCAGCGAGC CACTTGTAGA GAAATGCACT GAACCTTTCT ATGGTATATC TACCCTTGAT GAGCATGCTC CTGTTAATAC TTCTCATGGG TTATTGGAAA ACCTTTTCCA AAAAACAGGA GCCAGGGATT GTGGAGTGGA TGATAATGCT AAGAAGGCTA CGCTGTTGTT CAAATCAATG TCTGCGTTTG ATGACTTAAC CTTTTTCATG GATCCTCAGA AGGCTGTGAC TGAAGATAAT CTCGGGTCTA GAGTCGAAGC TGCTAAGACG GCCAACCATA AATTTATGTC TATTGACTCG AAGGCTTCAT GTATATCTGG TGGCATGCAC CCAAACCTGA AGACGGAGGA AATGATACTT CACAGTGTGC GCCCTTCAGA AAATATTCTG GTTCTTGTTG GGGACTTTGT GAAGAGCTAT TTAACTCTTG TGAAGGATGA ATCAGAGAAT TTATCAGAAG ATAGACTTAA GTTACTCAGC ATATCTAAAG GAAAGCTTAT TGACTGCATA AGAAAGGCAA ATGTCCGCAA CACGCAGTTG GCGGATGATA AGACTTTCAC GTTTGCATTA CTACTAGCAA TTAAACAGAT GACATGGTAT ATGTGTTTCT TCGGTATCCA TGTGGCATAT CTCTATCTTA ACAAGTTATG TCGAAGCTCA AATCCCATGA AGCTAGGATT GCACACCCTC TACTCAGCAG TTGAAACAGA ACACAAATCA GATGAGACAG ACGTCACAAG ATCACATCCA TCACTAGCTG TTATCCAGGG GATTTTACAT TCAGAATTTG CCCGGGGGAA CTCCAAAGCA TTACTTTTGG CTGAGAAAGT TTTTTGGTCC TCGCTGAAGA GGCTACTGAT GTCCATGGGT TTATCTTACA ATGAGCTCAA CAGTCCCTCC CCAAGTGAAA ATCGACCAAA TGTTCATGAA GCCACGGGGT TTAAAACCGC AGAACGTGGT TTCCTGCCGA TTTCAGACTG TCTAATTATC TCTTACGAGC AAATTTCTCC ATCTTTTCCT GTGGAGAATT TCAGCGTCAT TGTAGAATAT GGCGGTCCAA ATGCCTCGCC CAAATTTTCT TTTCCTTCTA AGTTGGATTC CTTTCCTGAC TTCCATTTCA TAAAAGTTGA GATGGATATG TCCAGTGCAT GCGGCCAACT GTGTGCAGGT GTCAAAGTAC CTTATAGTCT CAAAATGATA AAGGAAGATG AAGTTGAGAC GAAAACTGGC TGGTTGGAAG AAGTGTTGAA CTTTGTTCCA CTTGAAAGTG TGTGTTATGC AGGATCTTCA GTAACCACAA ATGAATCTGA ATATATCTCC ATGCCTCAAG AATCTGAAAG AAAACGTGGG ATAATTGAAC AAGGAGTTCT CTCTGACCAA AGATCTGTGA TTGTTGTGAA TTCAAAAACT GTTGATAAGG AGATGATCAT ATCCAGAAGA AGTACATACC AGAAGGTGTT AGCAATGGAA AAAGAAGGAG TGCAAGTTGT GGAGCGCGAT TCAGATCTAC CTGTGGACCT GATGCTAAGT CCTGCAGTTT GCCTACTCTG GTATGATTGT GAAACTGTTA GTAAGAAGTC GGCTGCAACT ATTGGTACTT CCTCAAGCTC ACTTTCATGG ATTGGAGATA TCGCAACCAA TGTTTTGACG TCATTGAGTT TCAGTTTCAG CACCTGCATT ATGGTTTTTG AGGGGGAACC CGCCTTTCTG GCTACAATAA TGGACTCCTC TGATGAACTG TATGTAGCAG CTGGTAGCCT GGGAATCAGT TTACAGATGT TTTGCTCATC GTCAGCTGAT TTCACGGATG AAATTATATT GAGGTGTATC AAGTCGTCTG TTAAGTTGTC CAAACTCCAT GTCAAAATGC CCGAGTCAGA ATCTCTAGCA GAATCATTTC TCACCAAGTT TCCTTCCGTG AATCCACTCA CAGCTCAAGT AATTCTGTCA TCTTCTGGGT CACTTCTCGA ATTCATGAAG CTCCCACATA AAAGCAAGGT TGATAGGATG CAAAAGTATC ATGTACCTGA AGAGAGTGTT GATCTATTCA GTTCACTATG CAGATACGGA GCGAGGGAGG ACTCCAGATC TGTAATGACA GACAGCTCTT CTTCGGTATC TTCTGGACCT GACTCAGACA CACACCATGT CAGTGTCCAT TCTGGTTCGA AAAAGAAACA GTACATTGCT GAGAAAGATG AGATAGATAT GGACGACTTG GTCCATTTTG CTCCCTCCAC AGAATTTGCT GATGCGCAGC TCAAGTCTTC TGGTGATTTT CAACTTGATG ATTCTTGGTC ATCGAGAGAT AATGAGATAT TTCATTTTGA CCCTGTCACT GAATTCTCTG ATGCACCTTT CAAGCCTTCT GGGATCAGTC ATCCCAATGA CTCTTGGCCA TCTAAAGATC CTGAGAGATT CGACAAGAAG CCAAGACCTG GTTCATCATC AAAGGACACA TTTTGGGAGA AAGATCAGCC TGGTTTTTCA GTGGAGGACA GTCTTCCTGG AATTCCTGAA TTAGAAGATT GGAGTTTCCC AGTTAAAGAC AAGTTCAAGA GCCAGAACAG AGGATGTAAA TTCCCAGTGA TGGGAGATTT CAACTTGCAT GACAATAGGA ACTCAGAGAG TTTCATCGTA GACTACAAAG GTGAAGTAAT CAACAGAGCT GATAAATTTC TGGAGGAAGA CTTCCCGCCT TCTCCTGGTT ACAATAGGTT TTCTCCAATA GTTTCTGATG TTGATGAAGA GGAACTTCCA AGAAAATCAA AATCTGCAAG GAAGTTATCT TTCTTTGGAT CTCTCCAGCC TAACTTCCCA AAAGCAGCTG AGATCGACTT GAGTTCTGAA AGATTCACCA CCGAGAAAGA TTCAAAATAT GATAACAATG CTTCTTTGCG TGGTTATGCT GATAACTATC CAGCAAAACG CCAAAGAACC CTTTTGGAGG AGGTCTTAAC TCGGAGATCC GCAGTTCCAA CAACAGAGCT TCCATTTAGA GAAGAGATAT CACATTTTGG TGGATCTCCA CTATCAAACG CAATCCGTTC TTCAAATCAA GTACAGAGTT CTCCTTGGAC GGTTGATTTC CTTAACAGAG TTAGAGAAAG AAGCAGGGCA AGGAAACAAC ATCAATCTCT TCCTTCTTAT GTCACTCCCT CTAGTTTGGA GACTCCAGGG AACATAAAGA AAGCTAGTAC CAAGAGAAAG AGTCCTTCCA TACTAGAGTT TTTCAAGTAT AAAGGAGGCA AAAAAATTCC AGAAGAGAAA AAGCAGAAGC GGTCAAAAAC TTCTTCAGCC TCGCCAAAAA ACGAGAGATT TTACTCTCCT CTTAAGTCAT GGACACCAAT TGATAAGCGA GCAAAACAGT CTCTATCTTA CGCAGGGAAT GGAACTGGAG GCCAAACAAA ACTGGTATGG AAGTAATAAA ACAAACACGG GGTAGC |
| Length | 4786 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_271: 3183.. 9359 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G52290.1 |
| Description | shortage in chiasmata 1 |
| TAIR curator summary | Encodes a protein with similarity to XPF endonucleases. Loss of function mutations have defects in meiosis- specifically a reduction in the number of chiasmata. As a result both pollen and embryo sacs are abnormal and plants have severely reduced fertility. |
| Alias | [SHOC1][SHORTAGE IN CHIASMATA 1] |
| Gene coexpression |
|---|
| MR |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
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| The four seasons |
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| Growth Chamber expression |
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