Detail



ID : Ahg950147

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|950147|scaffold_802034.1
Sequence
TCCCTCTTTT TATGTCGAAT ATGACCACAA ATCCACCTGG TCCCCGTGAA GTGAAGGATG CTTATTGCTT ATTGAACTTT GGAGACAACA TAACCACAAG CAGCATTTCC CCAGCAGGAA CTATCCACGA GGATAGTCCT GCTGTGATGA AACGCGGCAC CTTTGCCAGT ACGTGTCTTG TAAACAAGCT CTTAAATGGA GAAGTTGGCC CCAAGACAGT TCACATTCCT ACAGGAGAGA AAATTTGCAT TTATGATGCA GCAAGTAGAT ACAAGACCGC TGGACAGGAT ACGATCATAC TAGCTGGTGC TGAGTATGGA AGTGGTAGCT CTCGGGATTG GGCTGCAAAG GGTCCAATGC TTCTGGGAGT GAAAGCTATC ATTGCCAAGA GCTTTAATAG AGTCCACCGC AGCAACTTGG CTAGTATAAG GATTGTTCCT CTGTGTTTCA AGTCCGGTGA AGATGCAGAA ACCCTTGGAC TAACTGGCCA TGAACGCTAC ACAATCCACC TTCCTAGCGA TGTCAATGAG ATAAAACCAG GCCAGGACAT AACTGTGACC ACTGACACTG CTAATTCTTT TGTCTGCACT TTGCGGTTAG ACACAGAGGT AATCACAAAA GCTTTGTCTA GATTTGATTG TGACCATATA TTTGATGGTC TGACTTGGTT GATTGGAATT GATCAGGTGG AATTGGCATG CTATAATCAT GGCGGTATGC TTTCGTATAT CATTCGAAGT TTGAGCAATG AGTGAGTGAG TTTGCTGTTC CATGG 
Length775
Protein Sequence
Protein Residue
A.thaliana
AGI-codeAT4G26970.1
Descriptionaconitase 2
TAIR curator summaryEncodes an aconitase that can catalyze the conversion of citrate to isocitrate through a cis-aconitate intermediate, indicating that it may participate in the TCA cycle and other primary metabolic pathways. The protein is believed to accumulate in the mitochondria and the cytosol. It affects CSD2 (At2g28190 - a superoxide dismutase) transcript levels and may play a role in the response to oxidative stress. One member of the family (ACO1 - At35830) was shown to specifically bind to the 5' UTR of CSD2 in vitro.
Alias[ACO2][aconitase 2]
Gene coexpression
MR
MR Locus Description
3 Ahg933887 Transcription elongation factor (TFIIS) family protein
5.83095 Ahg933074
7.34847 Ahg345479
8.48528 Ahg927520 Putative methyltransferase family protein
18.8944 Ahg485290 Expressed protein
21.4243 Ahg942605
23.9792 Ahg948096
24.0832 Ahg932422 callose synthase 5
29.3258 Ahg472979 root hair defective 6-like 4
31.496 Ahg924088
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression