| Annotation |
|---|
| Description | jgi|Araly1|950230|scaffold_802117.1 |
| Sequence |
GACGTTTATC AGAGGCATGA ATGGCTTCTC TTCCTTTCAA CACTATCCCG ATTAATCTTC CATTTTCAGT ATCATCAAAA CCTTCTTCTA AACAGCACGA TGACCAAGCT CTTAATCCTT CTTCCACATC TTACTTTCAC CGCGTTTCGT CTCTATGTAA GAACGGTGAG ATCAAAGAAG CTCTGAGTTT AGTTACAGAG ATGGATTTCA GAAACCTACG CATTGGTCCA GAGATATACG GTGAAATCCT CCAAGGATGC GTTTACGAGA GAGATTTATG TACAGGGAAG CAAATTCATG CTCGGATTTT GAAGAATGGT GATTTCTACG CCAAAAATGA GTACATCGAG ACTAAATTGG TGATATTCTA CGCAAAGTGC GATGCTTTGG ATATAGCTGA AGTTCTTTTC ACGAAATTGA GGGTTCGTAA TGTTTTCTCT TGGGCAGCTA TTATTGGTGT GAAATGTAGG ATTGGGTTAT GTGAAGGAGC TTTAATGGGT TTTGTTGAGA TGCTTGAAAA TGAGATTTTT CCTGATAATT TTGTGGTTCC GAATGTTTGT AAGGCTTGTG GTGCGTTGCA ATGGAGTAGA TTTGGGAGAG GTGTTCATGG GTATGTGGTA AAATCTGGTC TTGAAGATTG TGTGTTTGTG GCTAGTAGTT TAGCTGATAT GTATGGGAAA TGTGGGGTTT TGGATGATGC GAGGAAGGTG TTCGATGAAA TTCCTGAGAG AAATGTTGTT GCCTGGAATG CGTTGATGGT TGGTTATGTA CAAAATGGGA TGAATGAGGA AGCGATTCGG CTTTTTTCTG ATATGAGGAA GGAAGGTGTT GAGCCTACTC GTGTCACTGT CTCGACTTGC TTATCTGCTT CGGCTAATAT GGGTGGGGTT GAAGAGGGGA AACAGTCTCA TGCCATTGCT ATTGTAAATG GACTGGAGCT GGATAATATC CTGGGGACAT CTTTATTGAA TTTCTATTGC AAAGTTGGTT TGATAGAGTA TGCTGAGATG GTTTTTGATC GGATGATTGA TAAAGATGTG GTAACATGGA ATCTGATTAT CTCCGGGTAT GTTCAACAAG GGCTAGTTGA AAATGCTATA TACATGTGTC AATTAATGAG ACGAGAGAAG CTGAAATATG ATTGTGTCAC TTTAGCGACG TTAATGTCGG CAGCTGCACG TACGAAGAAT CTAAAACTTG GGAAAGAGGT GCAGTGTTAT TGCATTAGAC ACAGTTTTGA ATCTGATATC GTTTTAGCCA GCACTGTGAT GGATATGTAT ACCAAGTGTG GTAGCATCGT TGATGCTAAG AAAGTGTTTG ATTCCACAGT AGAGAGAGAC TTGATACTGT GGAATACGTT ACTTGCAGCC TATGCAGAGT CTGGTCTTAG TGGAGAGGGC TTGAGATTGT TCTATGGGAT GCAGCTAGAA GGTGTACCAC CAAATCTGAT AACATGGAAT TTGATCATTC TAAGTCTTCT AAGGAATGGT GAGGTAAATG AGGCCAAGGA TATGTTCTTG CAGATGCAAT CCTCAGGCAT ATCTCCAAAT CTAATCTCCT GGACGACTAT GATGAATGGT ATGGTTCAAA ATGGTTGCAG TGAGGAGGCA ATTCTTTTTC TCAGAAAGAT GCAAGAATCA GGGCTGAGAC CAAATGCCTT TAGCATCACT GTAGCTCTCT CTGCTTGCGC AAGTCTAGCA TCACTGCATT TCGGAAGATC AATCCACGGT TACATCATAA GAAATCTACA GCATTCCTCT TCGGTCTCTA TTGAAACTTC TTTGGTTGAC ATGTATGCTA AATGTGGAGA TATAAACAAA GCAGAGAAGG TTTTTGGAAG TAAGTTATAC AGCGAGTTGC CTCTCTACAA TGCCATGATC TCGGCGTATG CGTTATATGG TAAGTTAAAA GAAGCAATCG CTCTATACAG AAGCTTAGAA GGCGTGGGTC TTAAACCAGA CAACATAACA ATCACAAATG TCTTATCAGC ATGTAACCAC GTAGGGGATA ATAACCAAGC TACCGAGATT GTCACTGAGA TGGTTTCAAA ACATGGCATG AAACCATGCT TGGAACATTA TGGACTGATG GTAGATCTTC TTGCATCAGC TGGAGAAACA GACAAGGCAT TAAGGTTAAT CGAGGAAATG CCATACAAGC CAGATGCACG AATGATCCAA TCTTTGGTTG CTTCTTGCAA CAAGCAGCAT AAGACAGAGC TTGTAGACTA CTTATCAAGG CAATTGATCG AATCCGAGCC TGACAACTCT GGTAATTACG TGACGATATC GAATGCTTAT GCAGTTGAAG GAAGTTGGGA TGAAGTTGTG AAGATGAGAG AGATAATGAA AGCTAAAGGT TTGAAGAAAA AGCCTGGATG TAGTTGGATT CAGATTAAAG GAGAAGGAGT CCATGTGTTT GTTGCTAATG ATAAGACACA TATTAGGATC AATGAGATAC AAAGGATTTT AGCATTGTTA CTATATGATA TGTGTTCGAA TTTCACGTGA TATTATTTGT ATGAAATATT |
| Length | 2530 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 16116281.. 16118818 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G55740.1 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| TAIR curator summary | Encodes a member of the E+ subgroup of the PPR protein family, containing the E and E+ motifs following a tandem array of PPR motifs. It also contains an unknown motif consisting of 15 aa, which is highly conserved in some PPR proteins, including CRR4. CRR21 is involved in RNA editing of the site 2 of ndhD (ndhD-2),which encodes a subunit of the NDH complex. The RNA editing changes aa 128 from Ser to Leu. Mutants have impaired NDH complex activity. |
| Alias | [CRR21][chlororespiratory reduction 21] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.48074 |
Ahg902591 | cytochrome P450, family 76, subfamily C, polypeptide 1 |
| 10.3923 |
Ahg905920 | |
| 20.7364 |
Ahg908768 | Nucleic acid-binding proteins superfamily |
| 25.671 |
Ahg474606 | chaperonin 60 beta |
| 25.7488 |
Ahg474076 | cytochrome c biogenesis protein family |
| 28.775 |
Ahg489818 | Oxidoreductase family protein |
| 30.8545 |
Ahg353700 | DNA topoisomerase, type IA, core |
| 38.0789 |
Ahg471101 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| 41.1339 |
Ahg946627 | pentatricopeptide (PPR) repeat-containing protein |
| 46.3141 |
Ahg927888 | cysteine synthase 26 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|