Detail



ID : Ahg951020

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|951020|scaffold_802907.1
Sequence
GGAAAATTAA GCTCTTTGGT ATGAAAATTC CTTTCCCGAC GGTTTTAGAG GTTACTACTG ATGAAGAAGA AGAAGAAAAG AACCAAAACG AGACGTTAAC TGATCAATCG GAGAAAGACA AAACCCTTAA GAAACCAACC AAGATTCTTC CATGTCCAAG ATGCAACAGC ATGGAGACAA AATTCTGTTA CTACAACAAC TACAACGTAA ACCAACCTCG CCATTTTTGT AAAGCCTGTC AGAGATATTG GACCTCTGGT GGGACCATGA GAAGTGTTCC CATCGGAGCA GGACGACGCA AGAACAAGAA CAACTCATCG TCATCAACTT CACATTACCA CCACGTGACT ATCTCCGAAA CAAATGGTCC GGTCCTTAGT TTCAGCCTCG GAGATGATCA AAAGGTCTCG AGTAATAGGT TCGGGAATCC AAAGCTAGTG GCTAGGATAG AGAACAATGA CGAGCGCTCA AATAACAACA CTTCGAACTG CTTTCCAGGA GTTTCGTGGC CGTACACGTG GAATCCTGCG TTTTACCCGG TTTACCCTTA CTGGAACATT CCAATGTTGT CTTCTCCGGT TAATTCAAGT CCTACTTCTA CTCTTGGTAA GCATTCGAGG GACGAAGACG AAACGGTGAA GCAAAAACAG AGGAACGTAT CTGTATTGGT TCCTAAGACT TTAAGAATTG ATGATCCTAA TGAAGCTGCA AAGAGTTCTA TATGGACAAC ACTTGGTATC AAGAACGAAG TTATGTTCAA TGGGTTTGCT TCGAAGAAAG AGGTTAAGAT TAATAACAAA GAAGAAACAG AGACTTCTCT TGTTCTTTGT GCAAACCCTG CTGCGTTATC AAGATCAATC AATTTTCATG AGCAGATGTG ATTGTATACA TATGATATAT A 
Length901
Protein Sequence
Protein Residue
Map Locationscaffold_8: 19256884.. 19258395
Download Sequence
A.thaliana
AGI-codeAT5G62430.1
Descriptioncycling DOF factor 1
TAIR curator summaryDof-type zinc finger domain-containing protein, similar to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Represses expression of Constans (CO), a circadian regulator of flowering time. Interacts with LKP2 and FKF1. Expression oscillates under constant light conditions. Mainly expressed in the vasculature of cotyledons, leaves and hypocotyls, but also in stomata. Localized to the nucleus and acts as a repressor of CONSTANS through binding to the Dof binding sites in the CO promoter. Protein gets degraded by FKF1 in the afternoon.
Alias[CDF1][cycling DOF factor 1]
Gene coexpression
MR
MR Locus Description
4 Ahg313311 Dof-type zinc finger DNA-binding family protein
8.83176 Ahg488595 Homeodomain-like superfamily protein
9.64365 Ahg928955
10.9545 Ahg496423 myb domain protein 96
11.6619 Ahg488432 CONSTANS-like 1
13.2288 Ahg341087
13.4164 Ahg476091 Dof-type zinc finger DNA-binding family protein
16.9115 Ahg472167 Erythronate-4-phosphate dehydrogenase family protein
18.6548 Ahg495005 Ca2+-binding protein 1
19.1311 Ahg495528 B-box type zinc finger family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression