BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311229
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61330.1 | Symbols: | rRNA processing protein-related | chr... 462 2e-129
> AT5G61330.1 | Symbols: | rRNA processing protein-related | chr5:24657148-24661021
REVERSE LENGTH=1584
Length=1584
Score = 462 bits (250), Expect = 2e-129
Identities = 299/321 (93%), Gaps = 9/321 (3%)
Strand=Plus/Plus
Query 469 GAAAAACAACAAGAAGGAGACCCTGAACTTGTGGAAGATGCTGAGTTCTATAGGCAGTTA 528
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 GAAAAACAAGAAGAAGGAGACCCTGAACTTGTGGAAGATGCTGAGTTCTATAGGCAGTTA 1193
Query 529 CTAAAGGAGTTTCTTGAGACCATCGATCCAGCTTCCCCTAGCGATAATCAAGCGGCTTTC 588
|||||||||||||| ||||| ||||||||||||| ||| | | | |||||||||
Sbjct 1194 CTAAAGGAGTTTCTCGAGACTATCGATCCAGCTT--CCT--C----A-GAGGCGGCTTTC 1244
Query 589 TACGAGATGAAGAAGTTTCAGACGAAGAAGAGGAAAATTGTGGATCGACGTGCCTCTAAG 648
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1245 TACGAGATGAAGAAGTTCCAGACGAAGAAGAGGAAAGTTGTGGATCGACGTGCCTCAAAG 1304
Query 649 AGCAGAAAGATCAGGTATAATGTTCATGAGAAGATTGTCAACTTCATGGCTCCACGACCA 708
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1305 AGCAGAAAGATCAGGTATAATGTTCATGAGAAGATTGTCAACTTTATGGCTCCACGACCA 1364
Query 709 GCAAAGATTCCTCCAAACACTGCGGATTTGCTCAAGAATCTCTTCGGTCTCAAGACCAGA 768
|| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1365 GCGAAGATTCCTCCAAACACGGCGGATTTGCTTAAGAATCTCTTCGGTCTCAAGACCAGA 1424
Query 769 AACGTTCAGTCTGAAGCGTAA 789
||||||||||||||||| |||
Sbjct 1425 AACGTTCAGTCTGAAGCTTAA 1445
Score = 435 bits (235), Expect = 4e-121
Identities = 278/296 (94%), Gaps = 13/296 (4%)
Strand=Plus/Plus
Query 2 TGAAGAACTTGAAGCGTGATAAGGGTGAAGATGCTGTTAAAGGTCAAGCGGTGAAGAATC 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 TGAAGAACTTGAAGCGTGATAAGGGTGAAGATGCTGTTAAAGGTCAAGCGGTGAAGAATC 588
Query 62 AGAAGGCTCTTTGGGATAAAACTCTGGAGTTCAGATTCTTACTTCAGAAAGCATTTGATC 121
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 589 AGAAGGCTCTTTGGGATAAGATTCTGGAGTTCAGATTCTTACTTCAGAAAGCATTTGATC 648
Query 122 GTTCTAACAGATTGCCACAGGAGCCTGTGAAATCGT-ATTTTTGTTCGGAAGATGAGGAT 180
|||| |||||||| |||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct 649 GTTCAAACAGATTACCACAGGAGCCTGTGAAATCGTTATTTT-GTTCAGAAGATGAGGAT 707
Query 181 GTCTCAACAGCATATACAGATCTAGTTACTTCATCTAAGAAGACATTAGATTTCCCTCTT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 708 GTCTCAACAGCATATACAGATCTAGTTACTTCATCTAAGAAGACATTAGATT-CCCTCTT 766
Query 241 GGAG---C-------TTTGTTTGAGAAGAACCCCTCGGTTGATCAACAAGTGAATG 286
|||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 767 GGAGTTGCAAGAGGCTTTGTTTGAGAAGAACCCCTCGGTTGATCAACAAGTGAATG 822
Score = 307 bits (166), Expect = 9e-83
Identities = 174/178 (98%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 289 AAGGCTGTGGACAAATGGCAGAGAAGAACAGAAGTTACAACTGGTGCAGCTGCTATTAAA 348
||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||
Sbjct 921 AAGGCTGTGGACAAATGGCAGAGAAAAACACAAGTCACAACTGGTGCAGCTGCTATTAAA 980
Query 349 GGAAAGCTCCACGCCTTTAACCAGAACGTTAGTGAACAGGTTGCTTCCTACATGAGGGAT 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 GGAAAGCTCCACGCCTTTAACCAGAACGTTAGTGAACAGGTTGCTTCCTACATGAGGGAT 1040
Query 409 CCAAGTAGAATGATTAAACAAATGCAACAATCAAGATCTACTGTTGCTGTTTTTGGAA 466
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1041 CCAAGTAGAATGATTAAACAGATGCAACAATCAAGATCTACTGTTGCTGTTTTTGGAA 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5