BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg311236

Length=1005
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G52180.1 | Symbols:  | LOCATED IN: endomembrane system; EXPR...   401    5e-111


> AT5G52180.1 | Symbols:  | LOCATED IN: endomembrane system; EXPRESSED 
IN: 22 plant structures; EXPRESSED DURING: 13 growth 
stages; CONTAINS InterPro DOMAIN/s: Transmembrane protein 161AB, 
predicted (InterPro:IPR019395); Has 82 Blast hits to 82 
proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa 
- 47; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes 
- 2 (source: NCBI BLink). | chr5:21200055-21201610 REVERSE LENGTH=1556
Length=1556

 Score =  401 bits (217),  Expect = 5e-111
 Identities = 269/293 (92%), Gaps = 8/293 (3%)
 Strand=Plus/Plus

Query  162  ATCCAAAGATAAATCCGAATTCGACGAAAGCAATGCTCAGATCTTTCGAATTAAGCTCGT  221
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  309  ATCCAAAGATAAATCCGAATTCGACGAAAGCAATGCTCAGATCTTTCGAATTAAGCTCGA  368

Query  222  TGAAGATCATCTCAGATCTCGAATGTATTTCACTAAGTACAATTCGATTTTCGTGTTATT  281
            |||||||||||||||||||||||||||||||||| ||||||||||| | |||||| ||| 
Sbjct  369  TGAAGATCATCTCAGATCTCGAATGTATTTCACTGAGTACAATTCGCTATTCGTGATATC  428

Query  282  GTTCTTAGCTGTTTCTTGCTTTCTTCTTCATAATTACTTCGGTGT-A--GAGGATA---G  335
            |||||||||||||||||||||||||||  |||| ||||||||| | |  |||||||   |
Sbjct  429  GTTCTTAGCTGTTTCTTGCTTTCTTCTAGATAAGTACTTCGGTATTATTGAGGATAATAG  488

Query  336  TCATGGAGTTTTGGGTAATGGATTGATGTTTCCGATTGTTCTTGGGTTTATAGCTTTGTG  395
            ||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  489  TCATGGAGTTTTAAGTAATGGATTGATGTTTCCGATTGTTCTAGGGTTTATAGCTTTGTG  548

Query  396  TAAGGT-TTTCGTTGCTTTGGGGAAGATTTCGATTGAGAGATCTGCTTCGAAG  447
            |||||| ||| || ||||||||||||||||| ||||||||||||||||| |||
Sbjct  549  TAAGGTGTTT-GTAGCTTTGGGGAAGATTTCTATTGAGAGATCTGCTTCTAAG  600


 Score =  385 bits (208),  Expect = 5e-106
 Identities = 255/278 (92%), Gaps = 2/278 (1%)
 Strand=Plus/Plus

Query  713   GTGGAACTAGT-AGGAGTCAGACTGGGTTGGTTGGTAATGTAGGCATGTCGAGTGATGAT  771
             |||| | |||| | |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct  968   GTGGTAGTAGTCA-GAGTCAGAGTGGGTTGGTTGGTAATGTAGGCATGTTGAGTGATGAT  1026

Query  772   TTTGTTAAGTTTCGGGTTTTGTGTTTGTTACTATCGGGTTTACTACAAGCGATGGCTGTT  831
             ||||  |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct  1027  TTTGCGAAGTTTCGGGTTTTGTGTTTGTTACTTTCGGGTTTACTACAAGCGATGGCGGTT  1086

Query  832   CGTCCTAACCTTCAGATGTTTTTGAACGAAGCAGTGCTCTCGTGGTATCAGAGATTACAT  891
             |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct  1087  CGTCCTAACCTTCAGATGTTCTTGAACGAAGCAGTCCTTTCGTGGTATCAGAGATTACAT  1146

Query  892   GGAAGCAAAACTCCTGATTTGGATTTTAGTCGTGCGAAGATGTTCCTTCACAACCACTAC  951
             ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct  1147  GGAAGTAAAACTCCTGATTTGGATTTTAGTCGTGCAAAGATGTTTCTTCACAACCATTAC  1206

Query  952   TTATGTCTCCTCGCTCTGCAGTTTTTGGCGCCGTCGGT  989
              |||| ||  | |||||||||||||||||||| |||||
Sbjct  1207  CTATGCCTTGTTGCTCTGCAGTTTTTGGCGCCTTCGGT  1244


 Score =  307 bits (166),  Expect = 1e-82
 Identities = 198/213 (93%), Gaps = 4/213 (2%)
 Strand=Plus/Plus

Query  471  TGCTGGTATTTTTCCTAAAGGATTTGATTTTCAATT-GGAATT-TGTTGATGCGTTTTGC  528
            ||||||| |||||||||||||||||||||||||||| ||  || ||||||||||||||| 
Sbjct  666  TGCTGGTGTTTTTCCTAAAGGATTTGATTTTCAATTAGG--TTCTGTTGATGCGTTTTGT  723

Query  529  TGTATTGTGATATCGTTTTCGATGGCTTGTATCAGTGGATTCCTTTATATGCCTGCTGGG  588
            || |||||||||||||||||||||||||||||  |||| |||||||||||||||||||| 
Sbjct  724  TGCATTGTGATATCGTTTTCGATGGCTTGTATTGGTGGTTTCCTTTATATGCCTGCTGGA  783

Query  589  AGAAGTGCAAGGTCGTTTTTGGTTGGGACTGATCAGATTAGGAGTAATTTGTCTATCATT  648
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct  784  AGAAGTGCAAGGTCGTTTTGGGTTGGGACTGATCAGATTAGGAGTAATTTGTCGATCATT  843

Query  649  TCTTGTGGATGGTTCGGTAGGATGATTCTCTAT  681
            |||||||||||||| |||||||||||||| |||
Sbjct  844  TCTTGTGGATGGTTTGGTAGGATGATTCTATAT  876



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 49229464060


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5