BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311240
Length=2139
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02060.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3197 0.0
> AT1G02060.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:360918-363094 REVERSE LENGTH=2177
Length=2177
Score = 3197 bits (1731), Expect = 0.0
Identities = 2012/2147 (94%), Gaps = 22/2147 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTCTTCTGTCCCTAAACTCCATGCTTTGTTTGTCGCCAAGTCTCTACCAGTAGTT 60
||||| |||||||| |||||||||||||||||||||||| ||||||||| ||| ||||
Sbjct 45 ATGGTATCTTCTGTACCTAAACTCCATGCTTTGTTTGTCTCCAAGTCTCAACC---AGTT 101
Query 61 ATCCGAGCCGCCAAAATTACCAATGAAG-AAGGTTCTGCGTCGACCAAATCAAAACTCGC 119
|||||||||||||| |||||||||||| |||| | | | |||||||||||||||||
Sbjct 102 CTCCGAGCCGCCAAAGTTACCAATGAAGAAAGG---T-C--C-ACCAAATCAAAACTCGC 154
Query 120 CAGGTCCTTGGCGCGTGCCGTGAACTCTAACCCGTGGTCGGACGAACTCGAGTCTTCACT 179
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 CAGGTCCTTGGCCCGTGCCGTGAACTCTAACCCGTGGTCGGACGAACTCGAGTCTTCACT 214
Query 180 CTCATCTCTTCACCCGT-CTGAACCTCTCTCCAGAACCACCGTTCTCCAAACCCTGCGTC 238
||||||||||| |||| | |||| |||||||||||||||||||||||||||||||||
Sbjct 215 ATCATCTCTTCATCCGTCCCAAACC-ATCTCCAGAACCACCGTTCTCCAAACCCTGCGTC 273
Query 239 TCATCAAGGTCCCTGCCGATGGTCTCCGGTTCTTCGACTGGGTTTACAACAA-GGGTTTC 297
|||||||||||||||| ||||||||||||||||| |||||||||| |||||| ||||||
Sbjct 274 TCATCAAGGTCCCTGCGGATGGTCTCCGGTTCTTTGACTGGGTTTCCAACAAGGGGTTT- 332
Query 298 TCTCACAAAGAGCAGTCTTTCTTCCTCATGTTAGAGTTCCTAGGTCGAGCTCGCAATCTC 357
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 333 TCTCACAAAGAGCAGTCTTTCTTCCTCATGTTAGAGTTCCTCGGTCGAGCTCGCAATCTC 392
Query 358 AATGCGGCTCGCAATTTCTTGTTCTCCATCGAGAAAAGGTCTAACGGCTGCGTCAAGCTC 417
|||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 393 AATGTGGCTCGCAATTTCTTGTTCTCCATCGAGAGAAGGTCTAATGGCTGCGTCAAGCTC 452
Query 418 CAGGATCGCTACTTCAACAGCTTGATTAGGAGCTACGGCAACGCTGGGCTCTTCCAGGAG 477
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 453 CAGGATCGCTACTTCAACAGCTTGATTAGGAGCTACGGGAACGCTGGGCTCTTCCAGGAG 512
Query 478 TCAGTGAACCTGTTCCAGACCATGAAGAAGATGGGCATCTCGCCTTCCGTGCTTACCTTC 537
|||||||| |||||||||||||||||| ||||||||||||| |||||||| |||||||||
Sbjct 513 TCAGTGAAGCTGTTCCAGACCATGAAGCAGATGGGCATCTCCCCTTCCGTTCTTACCTTC 572
Query 538 AACAGTCTTCTCTCGATTTTGCTTAAGCGTGGCCGAACTGGAATGGCCCATGACATGTTC 597
|||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |||||
Sbjct 573 AACAGTCTTCTCTCCATTTTGCTCAAGCGTGGCAGAACTGGAATGGCCCATGACTTGTTC 632
Query 598 GACGAAATGCGCCGTACCTACGGGGTTACCCCAGATTCCTATACTTTCAATACATTGATA 657
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 633 GACGAAATGCGTCGTACCTACGGGGTTACCCCAGACTCCTATACTTTCAATACATTGATA 692
Query 658 AGTGGGTTTTGCAAGAACTCCATGGTCGACCAAGCCTTTAGGATTTTTAAGGAAATGGAG 717
| ||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 693 AATGGGTTTTGTAAGAACTCCATGGTCGATGAAGCCTTTAGGATTTTTAAGGATATGGAG 752
Query 718 CTGTAT-AGTTGCAATCCTGACGTTGTTACATATAACACGATCATCGATGGGTTATGCAG 776
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 CTGTATCA-TTGCAATCCTGACGTTGTTACATATAACACGATCATCGATGGGTTATGCAG 811
Query 777 AGCTGGCAAGGTCAAGATTGCACACAATCTTTTGAATGGAATGTTGAAGAAAGCAACGGC 836
||| |||||||||||||||||||| ||| |||||| ||||||||||||||||||||| |
Sbjct 812 AGCCGGCAAGGTCAAGATTGCACATAATGTTTTGAGTGGAATGTTGAAGAAAGCAACCGA 871
Query 837 TGTGCATCCCAACATTGTTAGTTACACTACTCTGCTGCGAGGCTATTGTATGAAGCAGGA 896
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 872 TGTGCATCCCAACGTTGTTAGTTACACTACTCTGGTGCGAGGCTATTGTATGAAGCAGGA 931
Query 897 AATTGATGAAGCACTGCTTGTGTTTCATGAAATGCTGACCAGAGGGCTAAAACCCAATGC 956
||||||||||||| |||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct 932 AATTGATGAAGCAGTGCTTGTGTTTCATGACATGCTGAGTAGAGGGCTGAAACCCAATGC 991
Query 957 TGTAACTTACAATACTCTGATCAAGGGGCTCTCGGAGGCTCATAGATATGATGAGATCAA 1016
||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 992 TGTTACTTACAATACTCTGATCAAGGGGCTCTCTGAGGCTCACAGATATGATGAGATCAA 1051
Query 1017 AGGAT-TTTTGATTGGAGGG---GACGCAGTTACCACTTTCTCTCCAGATGCCTGCACTT 1072
| ||| | |||||||||||| |||||| ||||||||||| ||||||||||||||||||
Sbjct 1052 A-GATATCTTGATTGGAGGGAACGACGCATTTACCACTTTCGCTCCAGATGCCTGCACTT 1110
Query 1073 TTAATATTTTGATCAAAGCCCACTGCGATGCTGGACATCTAGATGCAGCGATGAAGGTGT 1132
|||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct 1111 TTAATATTTTGATCAAAGCCCACTGCGATGCTGGTCATTTGGATGCAGCGATGAAGGTGT 1170
Query 1133 TCCAAGAAATGCTGAATATGAAGTTGCATCCGGATTCAGCTTCATATAGTGTTTTGATTC 1192
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1171 TCCAAGAAATGCTGAATATGAAGTTGCATCCTGATTCAGCTTCTTATAGTGTTTTGATTC 1230
Query 1193 GTACTCTGTGCCTGAGAAATGAATTTGATAAAGCCGAGACATTGTTTAATGAGTTGTTTG 1252
||||||||||| ||||||| |||||||||| ||| ||||||||||| |||||||| ||||
Sbjct 1231 GTACTCTGTGCATGAGAAACGAATTTGATAGAGCTGAGACATTGTTCAATGAGTTATTTG 1290
Query 1253 AGAAGGAAGTATTGTTAGGTAAGAATGAATGCAAGCCTCTTGCTGCAGCTTATAACCCAA 1312
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1291 AGAAGGAAGTATTGTTAGGTAAGGATGAATGCAAGCCTCTCGCTGCAGCTTATAACCCAA 1350
Query 1313 TGTTCGAATACTTATGTGCCAATGGGAAAGCAAAACAAGCGGAGAAAGTTTTTAGGCAGC 1372
|||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1351 TGTTTGAATACTTATGTGCCAATGGGAAAACAAAACAAGCGGAGAAAGTTTTCAGGCAGC 1410
Query 1373 TGATGAAAAGAGGAGCGCAAGATCCATCCTCTTACAGGACTTTGATCACGGGTCTCTGCA 1432
||||||||||||||| ||||||||| ||||||||| ||||||||| ||||||| |||||
Sbjct 1411 TGATGAAAAGAGGAGTGCAAGATCCGCCCTCTTACAAGACTTTGATAACGGGTCACTGCA 1470
Query 1433 GAGAAGGTAAATTCAAGGCTGCTTATGAGCTGTTGGTTCTAATGCTGAGGCGGGAATTTG 1492
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1471 GAGAAGGTAAATTCAAGCCTGCTTATGAGCTGTTGGTTCTAATGCTCAGGCGGGAATTTG 1530
Query 1493 TTCCTGATCCTGAAACCTACGAGGTATTGATTGATGGGCTATTGAAGATAGGTGAAGCTC 1552
| ||||||| |||||| |||||| ||||||||||||| || |||||||||||||||||||
Sbjct 1531 TACCTGATCTTGAAACTTACGAGTTATTGATTGATGGACTGTTGAAGATAGGTGAAGCTC 1590
Query 1553 TTCTTGCTCATGATACCCTACAAAGGATGCTAAGGAGCTCTTATCTTCCGGTTGCAACCA 1612
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1591 TTCTTGCTCACGATACCCTACAAAGGATGCTAAGGAGCTCTTATCTTCCTGTTGCAACCA 1650
Query 1613 CTTTCCATTCTGTACTTGCAGAACTTGTGAAAAGGAAATTTGCTAACGACTCTTTCGGCT 1672
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||
Sbjct 1651 CTTTCCATTCTGTACTTGCAGAACTTGCGAAAAGGAAATTTGCTAACGAGTCTTTCTGCT 1710
Query 1673 TGCTAACGGTAATGTTGGAAAAACGAATAAGACAGAACATTGATCTTTCAACGCAGGCTG 1732
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1711 TGGTAACGCTAATGTTGGAAAAACGAATAAGACAGAACATTGATCTTTCAACGCAGGTTG 1770
Query 1733 TCAGATTGGTTTTTAGTAGTGCACAGAAAGAAAAGGCATTTCTGATTGTTAGGTTGCTTT 1792
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1771 TCAGATTGCTTTTTAGTAGTGCACAGAAAGAGAAGGCATTTCTGATTGTTAGGTTGCTTT 1830
Query 1793 ATGACAACGGGTATTTGATTAAGATGGAGGAATTACTTGATTTCCTCTGCGAGAATCGAA 1852
|||| |||||||||||| ||||||||||||||||||||| || ||||||||||||| |||
Sbjct 1831 ATGATAACGGGTATTTGGTTAAGATGGAGGAATTACTTGGTTACCTCTGCGAGAATAGAA 1890
Query 1853 AACTGCTTGATGCACACACACTTGTTCTGTTTTGTCTGGAAAAGAGTCAAATGGTAGATA 1912
|||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1891 AACTACTTGATGCACATACACTTGTTCTGTTTTGTCTGGAAAAAAGTCAAATGGTAGATA 1950
Query 1913 TCGACACGTGTAACACGATCATAGAAGGACTCTGTAAGCATAAGAGACACTCTGAAGCGT 1972
||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1951 TCGACACATGCAACACGGTCATAGAAGGACTCTGTAAGCATAAGAGACACTCTGAAGCGT 2010
Query 1973 TTAGTTTGTACAATGAATTAGTAGAACTAGGAAATCACCAACAGCTTAGCTGCCACGTGG 2032
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2011 TTAGTTTGTACAATGAATTAGTAGAACTAGGAAACCACCAACAGCTTAGCTGCCACGTGG 2070
Query 2033 TTTTGACAAATGCCTTAGAGGCTGCTGGAAAGTGGGAAGAACTTCAGTTTGTGTCAAAGA 2092
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2071 TTTTGAGGAATGCCTTAGAGGCTGCTGGAAAGTGGGAAGAACTTCAGTTTGTGTCAAAGA 2130
Query 2093 GGATGGCTACAATGAGAAAATCAGATAATTGCGCTGTATCAGAATGA 2139
||||||||||| ||||| |||||||| ||||| |||||| |||||||
Sbjct 2131 GGATGGCTACATTGAGAGAATCAGATGATTGCTCTGTATTAGAATGA 2177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106073751585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5