BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311305
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01290.1 | Symbols: CNX3 | cofactor of nitrate reductase and... 1094 0.0
> AT1G01290.1 | Symbols: CNX3 | cofactor of nitrate reductase and
xanthine dehydrogenase 3 | chr1:114286-115549 FORWARD LENGTH=1079
Length=1079
Score = 1094 bits (592), Expect = 0.0
Identities = 754/828 (91%), Gaps = 27/828 (3%)
Strand=Plus/Plus
Query 1 ATGATTTCGATGCTCCGTCGCGCCGTGTTTCTCCGTCGATTTCCGGCGGTGATTTCTCCG 60
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 14 ATGATTTCGACGCTCCGTCGCGCCGTGTTTCTCCGTCGATTTCCGGCGGTGGTTTCTCCG 73
Query 61 ATGAAAAGGGCTTTCAGCAGTAAAATTCACGATGAAATCGATCCCCAAATCATGAATATA 120
|| ||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||
Sbjct 74 ATCAAAAGGGCTTTCAGCAGTAGAATTGACGATGAATTCGATCCCCAAATCATGAATATA 133
Query 121 CATGAGCTGAATCAGGAAATGAAGTCAATCTTTGGAGAAGAACCCTCTCCCGATGGATTT 180
|||||||||||||||| ||| |||||||||||||| ||||||| |||||| ||
Sbjct 134 AATGAGCTGAATCAGGAGATGCAGTCAATCTTTGGACAAGAACCTTCTCCC----GA--- 186
Query 181 TCCGGTCCTACGACAATGGATTTCTCTGAGTTG-AA--ATCCAAAATTGAACCTTTGAAA 237
| |||||| |||||||||||||||||||||| || ||||||||| ||||||||| |
Sbjct 187 T--GGTCCTGGGACAATGGATTTCTCTGAGTTGAAATCATCCAAAATCGAACCTTTG--A 242
Query 238 TCTGCAAATCTGGAGAAT-TCTGATTTTAGATC-ACATATTGAGTATCAGAAATCTACGC 295
| ||| | ||||| | |||||||||| | ||| ||||||||||| |||||||| |
Sbjct 243 ---G---ATC-GAAGAATAT-TGATTTTAGA-CAACAAATTGAGTATCATAAATCTACAC 293
Query 296 GCTCGAGCAAGAACGATTCACAAGCTATAGAACAATCTGCAAAAGTGGCTTGTGATATGT 355
|||||||||||| ||||| |||||||||||||||| ||||||||||||| |||||||||
Sbjct 294 ACTCGAGCAAGAATGATTCGCAAGCTATAGAACAATATGCAAAAGTGGCTAGTGATATGT 353
Query 356 CTAAGCTAACCCATGTTGGGATCTCAGGGGAAGCTCAAATGGTGGATGTTTCTTCTAAGG 415
|||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 354 CTAAGCTAACACATGTTGGTATCGCAGGGGAAGCTCAAATGGTGGATGTTTCTTCTAAGG 413
Query 416 ACAATACTAAGAGAACTGCATTGGCTTGTTGTAAAGTTGTTCTTGGGAAAAGAGT-TTTC 474
||||| | ||||||||||||||||| |||||||||||| ||||||||||| |||| |||
Sbjct 414 ACAATTCCAAGAGAACTGCATTGGCCTGTTGTAAAGTTATTCTTGGGAAACGAGTATTT- 472
Query 475 GATTTGGTGTTAGCGAATCAAATGGGTAAAGGAGATGTTCTTGGAGTGGCGAAAATCGCT 534
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 473 GATTTGGTCTTAGCGAATCAAATGGGGAAAGGAGATGTTCTTGGAGTGGCGAAAATAGCT 532
Query 535 GGGATTAACGGAGCAAAACAAACTAGTAGCTTAATACCATTGTGTCATAACATTTCTCTT 594
||||| ||||||||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct 533 GGGATCAACGGAGCAAAACAAACCAGCAGCTTAATACCATTGTGTCATAACATTGCTCTT 592
Query 595 ACGCATGTTCGTGTCGACCTAAGACTAAACCCTGAGGATTTTAGTGTTGACATTGAAGGA 654
|||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 593 ACGCATGTTCGTGTAGACTTACGACTAAACCCTGAGGATTTTAGTGTTGACATTGAAGGA 652
Query 655 GAAGCTTCTTGCACTGGGAAAACCGGAGTTGAGATGGAAGCTATGACTGCTGTATCAGTT 714
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GAAGCTTCTTGCACTGGAAAAACCGGAGTTGAGATGGAAGCTATGACTGCTGTATCAGTT 712
Query 715 GCTGGTTTAACGGTTTACGATATGTGTAAGGCTGCTTCGAAAGATATCAGTATTACAGAC 774
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 713 GCTGGTTTGACTGTTTACGATATGTGTAAGGCTGCTTCCAAAGATATCAGTATTACAGAC 772
Query 775 GTGAGACTCGAGCGTAAAACTGGTGGAAAGAGCGGGTATTGGTCTAGA 822
||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 773 GTGAGGCTCGAGCGTAAAACTGGTGGAAAGAGCGGGTCTTGGTCTAGA 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5