BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg311310

Length=747
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G19060.1 | Symbols:  | Protein of unknown function (DUF626) ...   342    2e-93


> AT1G19060.1 | Symbols:  | Protein of unknown function (DUF626) 
| chr1:6582066-6583601 REVERSE LENGTH=864
Length=864

 Score =  342 bits (185),  Expect = 2e-93
 Identities = 273/313 (87%), Gaps = 15/313 (5%)
 Strand=Plus/Plus

Query  54   CCATGCGGCGAGGGATTACTGGCGTCGACTGGATGAATCCGAGGTATCGTTTCGATATCG  113
            ||||||||||||||||||||||||||||||| |||||||||| |  | ||||||||||||
Sbjct  42   CCATGCGGCGAGGGATTACTGGCGTCGACTGAATGAATCCGA-G--T-GTTTCGATATCG  97

Query  114  AGGGAATATTAGCACCACCAGGGGCCATTGCACTGATACCCCTACGACTGTCAACTGCCT  173
            |||||||   |||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct  98   AGGGAATCGAAGCACCACCAGGTGCCATTGCACTGATA-CCCTACGACTGTCAACTGCCT  156

Query  174  AATAGTAGGCATCCTGAACCTGTCTTGGTCAAGCTTTATGCATGCTAGTGCGGGGCTTCA  233
            ||||||   ||||||   ||| ||| |||||||| || |  |||||||||||||||||||
Sbjct  157  AATAGTTTCCATCCTCTTCCTCTCTGGGTCAAGC-TT-T--ATGCTAGTGCGGGGCTTCA  212

Query  234  TCG-TTACAATATGTTGGAGGTTCAAGTTAATGAACTAAG-GACCGGTAGGTTGGACATG  291
            ||| || ||||||||||||||||| ||||||||||| ||| |  ||| | |||| | || 
Sbjct  213  TCGATT-CAATATGTTGGAGGTTCTAGTTAATGAACGAAGTG-TCGGCAAGTTGAATATA  270

Query  292  ATCATTCCGATTGCTAGACCTAAAGGTGTGACCACCAA-GAAGCGCCTCATACCTTGGGA  350
            ||| |||||||||||||||||||||||||||||||||| || |||| |||||||||| ||
Sbjct  271  ATCGTTCCGATTGCTAGACCTAAAGGTGTGACCACCAACGA-GCGCTTCATACCTTGTGA  329

Query  351  TAGTTTTTCAGTG  363
            | |||||||||||
Sbjct  330  TTGTTTTTCAGTG  342


 Score =  313 bits (169),  Expect = 2e-84
 Identities = 204/220 (93%), Gaps = 6/220 (3%)
 Strand=Plus/Plus

Query  483  GACTCAACGCCAAAAATGCTGTGTGGTCTACATAACTTTTAAGGGATTGGCCAATGCTCG  542
            ||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||
Sbjct  569  GACTCAACGCCAAAACTGC--AGTGGTCTACATAACTTTTAAGGGATTGGCCAATGCTCG  626

Query  543  TATTGCTGCTGGTGAGCATGATGAACGTAAAGCTATCATTAGAAGAATCTTAAATGAGCA  602
            ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct  627  TATTGCTGCTGGTGAGCATTATGAACGTAAAGCTATCATTAGAAGAATCTTCAATGAGCA  686

Query  603  TACAGGAT-ACTTGTCTCTCATTGGTGATTTGATTGGAGAGAACGAA-TTCGTAAACATT  660
            |||||| | ||||||||||| ||||||||||||||||||||||  || ||||||||||||
Sbjct  687  TACAGG-TCACTTGTCTCTCCTTGGTGATTTGATTGGAGAGAAA-AAGTTCGTAAACATT  744

Query  661  GACCCTGCTACTTTTTTCAAGTCTCCCGCGTTTCTAGAAG  700
            ||||||| ||||| |||||| |||||||||| ||||||||
Sbjct  745  GACCCTGTTACTTATTTCAACTCTCCCGCGTATCTAGAAG  784


 Score =  189 bits (102),  Expect = 3e-47
 Identities = 116/123 (94%), Gaps = 0/123 (0%)
 Strand=Plus/Plus

Query  361  GTGAAGGAATCGGAGTTGCAAAACAATGATTGGATTTATCTGTATTTGCAACTTGTACTC  420
            |||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct  406  GTGAAGGAGTCGGAATTGCAAAACAATGATTGGATTAATCTGTATTTGGAACTTGTACTC  465

Query  421  TGTGCAATTGAAAGGGTCAGAATCTCAGATGGCGATCTGTCCAAGCTGAAGATTGTGAAA  480
            ||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  466  TGTGCAATTCAAAAGGTCAGAATCTCAGATAGCGATCTGTCCAAGCTGAAGATTGTGAAA  525

Query  481  GCG  483
            |||
Sbjct  526  GCG  528



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36269054134


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5