BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311313
Length=321
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01210.1 | Symbols: | DNA-directed RNA polymerase, subunit ... 521 1e-147
AT4G07950.1 | Symbols: | DNA-directed RNA polymerase, subunit ... 494 3e-139
> AT1G01210.1 | Symbols: | DNA-directed RNA polymerase, subunit
M, archaeal | chr1:88898-89745 FORWARD LENGTH=616
Length=616
Score = 521 bits (282), Expect = 1e-147
Identities = 308/321 (96%), Gaps = 0/321 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTTTTGTCCTACATGTGGGAATCTGTTGCGTTACGAGGGAAGTGGGAACTCGAGA 60
|||||||||||||| |||||||||||||||||||| ||||||||| |||| || ||||||
Sbjct 80 ATGGAGTTTTGTCCAACATGTGGGAATCTGTTGCGATACGAGGGAGGTGGCAATTCGAGA 139
Query 61 TTCTTCTGTTCCACATGTCCATACGTCGCCTACATCGAAAGACAGGTGGAGATAAAGAAG 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 140 TTCTTCTGTTCCACATGTCCATACGTCGCCTACATCCAAAGACAGGTGGAGATAAAGAAG 199
Query 121 AAGCAACTTCTAGTTAAGAAATCTATAGAACCTGTTGTGACTAAAGATGATATACCCACA 180
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 200 AAGCAACTTCTGGTTAAGAAATCTATAGAAGCTGTTGTGACTAAAGATGATATACCCACA 259
Query 181 GCCGCTGAAACTGAAGCTCCATGTCCAAGGTGCGGGCACGACAAGGCATACTTCAAATCA 240
|| |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 260 GCTGCTGAAACTGAAGCCCCATGTCCAAGGTGTGGCCACGACAAGGCATACTTCAAATCA 319
Query 241 ATGCAGATTCGTTCAGCGGATGAGCCAGAATCAAGATTTTATAGATGCTTGAAGTGCGAG 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 ATGCAGATTCGTTCAGCAGATGAGCCAGAATCAAGATTTTATAGATGCTTGAAGTGCGAG 379
Query 301 TTCACTTGGCGTGAGGAATGA 321
|||||||||||||||||||||
Sbjct 380 TTCACTTGGCGTGAGGAATGA 400
> AT4G07950.1 | Symbols: | DNA-directed RNA polymerase, subunit
M, archaeal | chr4:4798044-4799795 FORWARD LENGTH=737
Length=737
Score = 494 bits (267), Expect = 3e-139
Identities = 303/321 (94%), Gaps = 0/321 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTTTTGTCCTACATGTGGGAATCTGTTGCGTTACGAGGGAAGTGGGAACTCGAGA 60
|||||||||||||| |||||||||||||||||||| ||||||||| |||||| ||||||
Sbjct 132 ATGGAGTTTTGTCCCACATGTGGGAATCTGTTGCGCTACGAGGGAGGTGGGAGTTCGAGA 191
Query 61 TTCTTCTGTTCCACATGTCCATACGTCGCCTACATCGAAAGACAGGTGGAGATAAAGAAG 120
|||||||||||||||||||||||||| ||| | |||||||||| ||| ||||||||||||
Sbjct 192 TTCTTCTGTTCCACATGTCCATACGTTGCCAATATCGAAAGACGGGTTGAGATAAAGAAG 251
Query 121 AAGCAACTTCTAGTTAAGAAATCTATAGAACCTGTTGTGACTAAAGATGATATACCCACA 180
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 252 AAGCAACTTCTGGTTAAGAAATCTATAGAACCTGTTGTTACTAAAGATGATATACCCACA 311
Query 181 GCCGCTGAAACTGAAGCTCCATGTCCAAGGTGCGGGCACGACAAGGCATACTTCAAATCA 240
|| |||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 312 GCTGCTGAAACAGAAGCTCCATGTCCAAGGTGTGGCCACGACAAGGCGTACTTCAAATCA 371
Query 241 ATGCAGATTCGTTCAGCGGATGAGCCAGAATCAAGATTTTATAGATGCTTGAAGTGCGAG 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 ATGCAGATTCGTTCAGCAGATGAGCCAGAATCAAGATTTTATAGATGCTTGAAGTGCGAG 431
Query 301 TTCACTTGGCGTGAGGAATGA 321
|||||||||||||||||||||
Sbjct 432 TTCACTTGGCGTGAGGAATGA 452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14929521453
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5