BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311315
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01190.1 | Symbols: CYP78A8 | cytochrome P450, family 78, su... 2453 0.0
AT1G13710.1 | Symbols: CYP78A5, KLU | cytochrome P450, family 7... 75.0 2e-12
> AT1G01190.1 | Symbols: CYP78A8 | cytochrome P450, family 78,
subfamily A, polypeptide 8 | chr1:83045-84864 REVERSE LENGTH=1608
Length=1608
Score = 2453 bits (1328), Expect = 0.0
Identities = 1512/1602 (94%), Gaps = 7/1602 (0%)
Strand=Plus/Plus
Query 16 ATGAGAACCGAAATAGAAAATTTGTGGGTATTTGCTCTTGCATCAAAATTCAATATTTTC 75
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGAGAACCGAAATAGAAAGTTTGTGGGTATTTGCTCTTGCATCAAAATTCAATATTTAC 60
Query 76 ATGCAAGAACATTTTGCTTCCCTTCTTC-TCGCCATAGCTATCACTTGGTGTACCTTAAC 134
|||||| |||||||||||||||||| || ||||||| ||||||||||||| |||| ||||
Sbjct 61 ATGCAACAACATTTTGCTTCCCTTC-TCGTCGCCATTGCTATCACTTGGTTTACCATAAC 119
Query 135 CATCGTATTTTGGTCTACTCCGGGTGGACCGGCTTGGGGAAAATACTTCTTCACTCGCCG 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CATCGTATTTTGGTCTACTCCGGGTGGACCGGCTTGGGGAAAATACTTCTTCACTCGCCG 179
Query 195 GTTTAGTTCTCTCGGTCATAACCGAAAATCCAAGAATCTCATTCCCGGTCCTCGAGGGTT 254
||||| |||||||| | | |||||||||| |||||||||||||||||||||| |||||||
Sbjct 180 GTTTATTTCTCTCGATTACAACCGAAAATACAAGAATCTCATTCCCGGTCCTAGAGGGTT 239
Query 255 TCCACTTGTTGGAAGCATGAGCCTCAGGTCAAGCCACGTGGCTCATCAGCGCATAGCGTC 314
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 TCCACTTGTGGGAAGCATGAGCCTTAGGTCAAGCCACGTGGCTCATCAGCGCATAGCGTC 299
Query 315 AGTGGCCGAGATGAGTAACGCCAAGCGGCTCATGGCGTTTAGCCTCGGCGATACTAAGGT 374
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 TGTGGCTGAGATGAGTAACGCCAAGCGGCTCATGGCGTTTAGCCTCGGTGATACTAAGGT 359
Query 375 GGTGGTGACGTGTCATCCTGACGTGGCGAAAGAA-ATACTAAACAGTTCCGTTTTTGCAG 433
|||||||||||||||||||| |||||| |||| | |||||||||||||| |||||||| |
Sbjct 360 GGTGGTGACGTGTCATCCTGCCGTGGC-AAAGGAGATACTAAACAGTTCGGTTTTTGCTG 418
Query 434 ACCGGCCGGTTGACGAAACCGCTTACGGTTTGATGTTTAATCGAGCCATGGGATTTGCTC 493
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 419 ACCGACCGGTTGACGAAACCGCTTACGGTTTGATGTTTAACCGAGCCATGGGATTTGCTC 478
Query 494 CCAATGGTACTTACTGGCGTACACTGCGTCGGTTAAGCTCGAACCATCTTTTCAACCCAA 553
||||||||||||| |||||||| |||||||||||| |||||||||||||||| ||||| |
Sbjct 479 CCAATGGTACTTATTGGCGTACGCTGCGTCGGTTAGGCTCGAACCATCTTTTTAACCCGA 538
Query 554 AGCAAATCAAACGCTCGGAGGAGCAGAGAAGAGTGATCGCGACTCAGATGGTTAATGCGT 613
|||||||||||| |||||||| |||||| | ||||| |||||||||||||| |||||||
Sbjct 539 AGCAAATCAAACAATCGGAGGATCAGAGACGGGTGATAGCGACTCAGATGGTGAATGCGT 598
Query 614 TTGCACGCAACGCTAAATCTGCGTTTGCAGTGCGTGATTTGCTCAAAACAGCGTCGTTGT 673
||||||| ||| ||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 599 TTGCACGTAACCCTAAATCCGCGTGTGCAGTGCGTGATTTGCTCAAAACAGCGTCGTTGT 658
Query 674 GTAACATGATGGGATCGGTTTTTGGGAGAGAATATGAATTGGAGTCAAATAACAACGTGG 733
||||||||||||| | |||||| |||||||| |||||||||||||||||||||||| |||
Sbjct 659 GTAACATGATGGGTTTGGTTTTCGGGAGAGAGTATGAATTGGAGTCAAATAACAACTTGG 718
Query 734 AATCGGAATGCTTAAAGGGTTTGGTTGAAGAAGGGTACGATCTTCTCGGTACGTTAAATT 793
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 719 AATCTGAATGCTTAAAGGGTTTGGTTGAAGAAGGGTACGATCTTCTAGGTACGTTAAATT 778
Query 794 GGACCGACCATCTCCCTTGGTTAGCCGGTTTAGATTTCCAACAAATCCGGTTTAGGTGCT 853
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GGACCGACCATCTTCCTTGGTTAGCCGGTTTAGATTTCCAACAAATCCGGTTTAGGTGCT 838
Query 854 CCCAGCTCGTACCGAAAGTAAATCTGTTACTGAGCCGTATCATTCATGAACA-C-TA-TG 910
| ||||||||||||||||||||||||||| ||||||||||||| |||||||| | | ||
Sbjct 839 CGCAGCTCGTACCGAAAGTAAATCTGTTATTGAGCCGTATCATACATGAACAACGTGCTG 898
Query 911 CCACCGGTAACTTTCTTGACGTGCTACTTTCACTTCAACGTTCAGAAAAATTATCAGATT 970
|||| ||||||||||||||| || ||||||| |||||| ||||||||||||||||||| |
Sbjct 899 CCACGGGTAACTTTCTTGACATGTTACTTTCTCTTCAAGGTTCAGAAAAATTATCAGAAT 958
Query 971 CAGACATAGTTGCTGTTCTTTGGGAAATGATATTTAGGGGAACGGACACTGTTGCGGTTT 1030
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CCGACATGGTTGCTGTTCTTTGGGAAATGATATTTAGGGGAACGGACACTGTTGCGGTTT 1018
Query 1031 TGATCGAGTGGGTCCTAGCGAGGATTGTGATGCATCCTAAAGTTCAATCAACGGTCCACG 1090
|| |||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1019 TGGTCGAGTGGGTGCTAGCGAGGATTGTGATGCATCCCAAAGTTCAATTAACGGTCCACG 1078
Query 1091 ATGAGCTTGACCGAGTCGTTGGCAGATCAAGAACCGTCGATGAGTCAGACCTTCCATCGC 1150
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1079 ATGAGCTTGACCGAGTCGTTGGCAGATCAAGAACCGTGGATGAGTCAGACCTTCCATCAC 1138
Query 1151 TCACGTATCTAACGGCTATGATCAAAGAAGTGTTGAGGCTGCATCCACCAGGCCCACTTC 1210
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1139 TCACGTATCTAACGGCTATGATCAAAGAAGTGTTGAGGCTGCATCCACCAGGTCCACTGC 1198
Query 1211 TTTCTTGGGCACGCCTCTCTATAACAGACACCACCGTAGACGGATATCACGTGCCGGCTG 1270
||||||||||||| || |||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1199 TTTCTTGGGCACGACTGTCTATAACAGACACTTCCGTAGATGGATATCACGTGCCGGCTG 1258
Query 1271 GGACCACCGCGATGGTCAACATGTGGGCTATAGCACGTGACCCGCACGTGTGGGAGGATC 1330
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1259 GGACCACCGCGATGGTCAACATGTGGGCTATAGCACGTGACCCACACGTGTGGGAGGATC 1318
Query 1331 CTTTAGAGTTTAAGCCTGAGAGGTTCGTGGCTAAAGATGGTGAAGCTGAGTTCTCTGTTT 1390
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1319 CTTTAGAGTTTAAGCCTGAGAGGTTCGTGGCTAAAGAGGGTGAAGCTGAGTTCTCTGTTT 1378
Query 1391 TCGGGTCGGATCTGAGGTTGGCACCGTTCGGGTCCGGTAAGAGGGTTTGCCCTGGAAAGA 1450
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1379 TCGGGTCGGATCTGAGGTTGGCACCGTTCGGGTCGGGTAAGAGGGTTTGCCCTGGAAAGA 1438
Query 1451 ATTTGGGGCTTACGACGGTGTCGTTTTGGGTTGCAACGCTCTTGCATGAGTTTGAGTGGC 1510
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 ATTTGGGACTTACAACGGTGTCGTTTTGGGTTGCAACGCTCTTGCATGAGTTTGAGTGGC 1498
Query 1511 TTCCAAGCGTCGAAGCAAACCCTCCAGATCTCTCGGAGGTTTTGAGGCTCTCGTGCGAGA 1570
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1499 TTCCTAGCGTCGAAGCTAACCCTCCAGATCTCTCGGAGGTTTTGAGGCTCTCGTGTGAGA 1558
Query 1571 TGGCTTGTCCTCTTATCGTTAACGTAAGCCCAAGGCGTAAGA 1612
|||||||||| || ||||||||||||||| ||||||||||||
Sbjct 1559 TGGCTTGTCCACTCATCGTTAACGTAAGCTCAAGGCGTAAGA 1600
> AT1G13710.1 | Symbols: CYP78A5, KLU | cytochrome P450, family
78, subfamily A, polypeptide 5 | chr1:4702725-4704657 REVERSE
LENGTH=1826
Length=1826
Score = 75.0 bits (40), Expect = 2e-12
Identities = 91/115 (79%), Gaps = 6/115 (5%)
Strand=Plus/Plus
Query 955 GAAAAATTATCAGATTCAGACATAG-TTGCTGTTCTTTGGGAAATGATATTTAG-GGGAA 1012
||||| || || ||||| ||||| | |||||||||||||||||||||||||||| ||||
Sbjct 966 GAAAAGTTGTCTGATTCTGACAT-GATTGCTGTTCTTTGGGAAATGATATTTAGAGGGA- 1023
Query 1013 CGGACACTGTTGCGGTTTT-GATCGAGTGGGTCCTAGCGAGGATTGTGATGCATC 1066
| || || |||||| || | | | || ||||| || || || || || ||||||
Sbjct 1024 CAGATACAGTTGCGATTCTAG-TGGAATGGGTGCTTGCAAGAATGGTTTTGCATC 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80019668730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5