BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311317
Length=300
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01170.1 | Symbols: | Protein of unknown function (DUF1138)... 230 7e-60
> AT1G01170.1 | Symbols: | Protein of unknown function (DUF1138)
| chr1:73931-74737 REVERSE LENGTH=515
Length=515
Score = 230 bits (124), Expect = 7e-60
Identities = 140/148 (95%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 153 AGGGACTACTCCAGGAACCGTCTCTAACAAAGAATGGTGGGCGGCCACCGATGAGAAATT 212
|||||||||||||||||| ||||||||||||||||||||||| || || |||||||||||
Sbjct 194 AGGGACTACTCCAGGAACTGTCTCTAACAAAGAATGGTGGGCAGCAACGGATGAGAAATT 253
Query 213 TCAAGCATGGCCAAGAACCGCTGGTCCTCCCGTCGTTATGAATCCCATTAGCCGTCAGAA 272
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 254 CCAAGCATGGCCAAGAACCGCTGGTCCTCCCGTTGTTATGAATCCCATTAGCCGTCAGAA 313
Query 273 TTTCATCGTGAAGACGCGTCCGGAATGA 300
||||||||| ||||| ||||||||||||
Sbjct 314 TTTCATCGTCAAGACTCGTCCGGAATGA 341
Score = 176 bits (95), Expect = 1e-43
Identities = 101/104 (97%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 10 GCATCAGGAGGTAAAGCCAAGTACATAATCGGTGCTCTCATTGGTTCTTTCGGAATCTCA 69
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 93 GCATCAGGAGGTAAAGCCAAGTACATAATCGGTGCTCTCATCGGTTCTTTCGGAATCTCA 152
Query 70 TACCTCTTCGACAAAGTTATCTCTGATAATAAGATCTTCGGAGG 113
||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 153 TACATCTTCGACAAAGTTATCTCTGATAATAAGATCTTTGGAGG 196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13873898724
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5