BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg311321

Length=663
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G47170.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   291    8e-78


> AT5G47170.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G01130.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:19158508-19158960 REVERSE LENGTH=453
Length=453

 Score =  291 bits (157),  Expect = 8e-78
 Identities = 333/410 (81%), Gaps = 44/410 (11%)
 Strand=Plus/Plus

Query  1    ATGGAGAAACGTTCAGATACAGAGAGTTCAGAAGAGATTTTGGGTGATTGGGATTTAACT  60
            |||||||||||||||||||||||||||||   ||||||||| |  |||||| ||||| ||
Sbjct  1    ATGGAGAAACGTTCAGATACAGAGAGTTC---AGAGATTTTAGAAGATTGGCATTTATCT  57

Query  61   CCTCCGGTGGATCCGGAAGAAAGAGTCGTAATGGTTTCTGTTCC-AC--CAG-A-A-TCT  114
            ||||| ||| ||||||||||| || ||||||||||||||||||| ||  ||  | | |||
Sbjct  58   CCTCCCGTGAATCCGGAAGAAGGAATCGTAATGGTTTCTGTTCCCACTTCACCAGAGTCT  117

Query  115  GATTACGCGAGATCGGATCAACCGAAAGAGATCGAAACTAGGGTTTCAGACAAGGAA--A  172
            ||  | ||||||| | ||| ||| |||||||| |||||||||||||| |||||| ||  |
Sbjct  118  GACGATGCGAGATTGAATCCACCAAAAGAGATTGAAACTAGGGTTTCGGACAAGAAATTA  177

Query  173  G-----A-A--A-C-GTCGCCGGAGAATCATCGGCAAGGAGAGTGTTGCCGCCGTGGATG  222
            |     | |  | | |||||||| ||| || | || ||||||||||||||||||||||||
Sbjct  178  GGTTCCACATCAACAGTCGCCGGTGAAGCAGCAGCGAGGAGAGTGTTGCCGCCGTGGATG  237

Query  223  GAGCCGTCATATGAATGGGGTGGTGGAAAATGgaaagaagacggaagaaagaagaagaag  282
            |||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||| 
Sbjct  238  GAGCCGTCGTACGAATGGGGTGGTGGGAAATGGAAAGAAGATGGAAGAAAGAAGAAGAA-  296

Query  283  aaagataaagagaaagagaaagagaaaaagaaagaagagaTTATTCCTTTCAAAGAAATT  342
            |  ||    || || |||||||| |    ||  ||     |||| ||||| |||||||| 
Sbjct  297  A--GA----GA-AA-GAGAAAGA-A----GA--GA-----TTATACCTTTTAAAGAAATC  336

Query  343  ATTGAAGCTCTGCTTCGAAACTCCGGTGATAAGGTTCAAG-AAGACAAGG  391
            ||||||||||||||||||||||||||||| |||||| ||| |||||||||
Sbjct  337  ATTGAAGCTCTGCTTCGAAACTCCGGTGACAAGGTT-AAGGAAGACAAGG  385



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32049385786


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5