BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311324
Length=342
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01100.1 | Symbols: | 60S acidic ribosomal protein family |... 540 4e-153
AT5G47700.1 | Symbols: | 60S acidic ribosomal protein family |... 521 1e-147
> AT1G01100.1 | Symbols: | 60S acidic ribosomal protein family
| chr1:50090-51108 REVERSE LENGTH=587
Length=587
Score = 540 bits (292), Expect = 4e-153
Identities = 326/342 (95%), Gaps = 3/342 (1%)
Strand=Plus/Plus
Query 1 ATGTCGACAGTTGGTGAGCTTGCTTGCAGTTACGCTGTTATGATCCTCGAAGACGAGGGT 60
|||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 55 ATGTCGACAGTTGGAGAGCTTGCTTGCAGCTACGCTGTTATGATCCTCGAGGACGAGGGT 114
Query 61 ATTGCTATTACGGCTGACAAAATCGCGACTTTGGTGAAAGCTGCTGGTGTTAGTATTGAG 120
|| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 115 ATCGCTATCACGGCTGACAAAATCGCGACCTTGGTGAAAGCTGCTGGTGTTAGTATTGAG 174
Query 121 TCATACTGGCCAATGCTATTCGCCAAGATGGCTGAGAAACGTAACGTGACTGATCTCATC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TCATACTGGCCAATGCTATTCGCCAAGATGGCTGAGAAACGTAACGTGACTGATCTCATC 234
Query 181 ATGAACGTtggtgctggtggtggaggtggtgctccggttgcagctgctgctccagctgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 ATGAACGTTGGTGCTGGTGGTGGAGGTGGTGCTCCGGTTGCAGCTGCTGCTCCAGCTGCT 294
Query 241 ggcggtggtgctgcagcagctgctcctgctgcCGAGGAGAAGAAGAAGGATGAACCAGCA 300
||||||||||| | ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 295 GGCGGTGGTGC-G--GCAGCTGCTCCTGCTGCTGAGGAGAAGAAGAAGGATGAGCCAGCA 351
Query 301 GAAGAGAGTGATGGAGATTTGGGATTCGGCTTGTTCGATTAA 342
||||||||||| ||||||||||| ||||| ||||| || |||
Sbjct 352 GAAGAGAGTGACGGAGATTTGGGTTTCGGTTTGTTTGACTAA 393
> AT5G47700.1 | Symbols: | 60S acidic ribosomal protein family
| chr5:19327803-19328983 REVERSE LENGTH=675
Length=675
Score = 521 bits (282), Expect = 1e-147
Identities = 322/342 (94%), Gaps = 0/342 (0%)
Strand=Plus/Plus
Query 1 ATGTCGACAGTTGGTGAGCTTGCTTGCAGTTACGCTGTTATGATCCTCGAAGACGAGGGT 60
||||||||||| || ||||| |||||||| |||||||||||||||||||| || ||||||
Sbjct 118 ATGTCGACAGTGGGAGAGCTCGCTTGCAGCTACGCTGTTATGATCCTCGAGGATGAGGGT 177
Query 61 ATTGCTATTACGGCTGACAAAATCGCGACTTTGGTGAAAGCTGCTGGTGTTAGTATTGAG 120
|||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 178 ATTGCTATCACGGCTGACAAAATCGCCACTTTGGTGAAAGCTGCTGGTGTTACCATTGAG 237
Query 121 TCATACTGGCCAATGCTATTCGCCAAGATGGCTGAGAAACGTAACGTGACTGATCTCATC 180
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 238 TCATACTGGCCAATGCTATTCGCCAAGATGGCTGAGAAACGTAATGTCACTGATCTCATC 297
Query 181 ATGAACGTtggtgctggtggtggaggtggtgctccggttgcagctgctgctccagctgct 240
|||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 298 ATGAACGTTGGTGCTGGTGGTGGAGGTGGTGCGCCTGTTGCAGCTGCTGCTCCTGCTGCT 357
Query 241 ggcggtggtgctgcagcagctgctcctgctgcCGAGGAGAAGAAGAAGGATGAACCAGCA 300
|||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 358 GGCGGTGGTGCTGCCGCTGCTGCTCCTGCTGCCGAGGAGAAGAAGAAGGACGAACCAGCA 417
Query 301 GAAGAGAGTGATGGAGATTTGGGATTCGGCTTGTTCGATTAA 342
||||||||||||||||||||||| || |||||||||||||||
Sbjct 418 GAAGAGAGTGATGGAGATTTGGGTTTTGGCTTGTTCGATTAA 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15985144182
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5