BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311334
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04420.1 | Symbols: anac048, NAC048 | NAC domain containing ... 774 0.0
AT1G02220.1 | Symbols: ANAC003, NAC003 | NAC domain containing ... 697 0.0
AT1G02250.1 | Symbols: anac005, NAC005 | NAC domain containing ... 195 1e-48
AT3G04410.1 | Symbols: | NAC (No Apical Meristem) domain trans... 174 1e-42
> AT3G04420.1 | Symbols: anac048, NAC048 | NAC domain containing
protein 48 | chr3:1172746-1174467 FORWARD LENGTH=1295
Length=1295
Score = 774 bits (419), Expect = 0.0
Identities = 518/563 (92%), Gaps = 17/563 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAATCCGGTGGGTTTAAGATTCCGTCCGACCGACGAGGAGATCGTCGTCGATTAC 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 95 ATGGAGAATCCGGTGGGTTTAAGATTCCGTCCGACCGACAAGGAGATCGTCGTCGATTAC 154
Query 61 CTCCGACCAAAAAATCT-CGAAAGGGACACGAGCCATGTCGATCGAGTCATTAGCACAGT 119
|||||||||||||| || ||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 155 CTCCGACCAAAAAA-CTCCGATAGGGACACGAGTCATGTTGATCGAGTCATTAGCACAGT 213
Query 120 CACTATCCGTAGCTTTGATCCTTGGGAGTTACCTTGCCAGTCGAGGATCAAACTGAAAGA 179
||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 214 CACTATCCGTAGCTTCGACCCTTGGGAGTTACCTTGCCAGTCTAGGATCAAACTGAAAGA 273
Query 180 TGAGTCTTGGTGTTTCTTCAGCCCTAAGGAGAACAAATATGGCAGAGGTGAGCAACAGAT 239
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 274 TGAGTCTTGGTGTTTCTTCAGCCCTAAGGAGAACAAATATGGCAGAGGTGATCAACAAAT 333
Query 240 TAGAAAAACGAAATCTGGGTTT-TGGAAGATTACTGGAAAACCAAAGGCTATCATGCGTA 298
|||||||||||||||||| || |||||||||||||| ||||||||| ||||| ||||||
Sbjct 334 TAGAAAAACGAAATCTGG-TTACTGGAAGATTACTGGCAAACCAAAGCCTATCTTGCGTA 392
Query 299 ATCGCCAAAAGATCGGTGAGAAAA-GAATTTTGATGTTTTAC-TACAGTAAGGAACTCGG 356
| |||||| ||||||||||||||| | |||||||||||||| | ||||||||||| ||
Sbjct 393 ACCGCCAAGAGATCGGTGAGAAAAAGG-TTTTGATGTTTTACATG-AGTAAGGAACTTGG 450
Query 357 TGGATCCAAATCCGATTGGGTTATGCACGAGTACCACGCTTTCTCTCCTACTCAGATGAT 416
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 451 TGGATCCAAATCCGACTGGGTTATGCACGAGTACCATGCTTTCTCTCCTACTCAGATGAT 510
Query 417 GATGACATACACAATCTGTAAAGTTATGTTTAAGGGTGACGTGAGAGAGATTCcttctgc 476
||||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 511 GATGACATATACAATATGTAAAGTTATGTTTAAGGGTGACGTGAGAGAGATT--T-CT-- 565
Query 477 ttcttcttcttcttcttctCATGGTAGTGGAATTGAGCAGAGTCGTCCCTCTTTAATCCC 536
| |||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct 566 T-CTTCTTCTGCTTCTT---ATGGTAGTGAAATTGAGCAGAGTCGTGACTCTTTAATCCC 621
Query 537 TCTTCTTGAGAACAATTCTGAGG 559
|||||||| |||| |||||||||
Sbjct 622 TCTTCTTGTGAACGATTCTGAGG 644
Score = 289 bits (156), Expect = 5e-77
Identities = 202/224 (90%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 909 AATCAAGTTAGTGTCACTAACTCAAGAGGTGAGCCAAGCTCTGATAACCAGTATCGATAC 968
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 898 AATCAACTTAGTGTCACTAACTCAAGAGGTGAGCCAAGCTCTGATAACCAGTATTGATAC 957
Query 969 ACCCGAGAAGAAGAAGAATCCTTCTAATGATGCACAAGAGACTGAGATTGGAGAGCATAA 1028
||||||||||| |||| ||||| | |||||||||||| ||||| | ||||| ||| ||
Sbjct 958 ACCCGAGAAGATTAAGAGTCCTTATGATGATGCACAAGGGACTGGGGCTGGAGGGCAAAA 1017
Query 1029 ATTGGGTCAAGAGACGATC-A-AGAAGAAAAGTGCTGGTTTCTTTCACAGGATGATACAA 1086
||||||||||||||| || | |||||||| | |||||||||||||||||||||||||||
Sbjct 1018 ATTGGGTCAAGAGAC--TCGAGAGAAGAAACGAGCTGGTTTCTTTCACAGGATGATACAA 1075
Query 1087 AAATTCGTCAAGAAAATTCACCTTTGTTCTTCTATCTCAAGAAC 1130
| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1076 ATATTCGTCAAGAAAATTCACCAATGTTCTTCTATCTCAAGAAC 1119
Score = 215 bits (116), Expect = 8e-55
Identities = 205/248 (83%), Gaps = 6/248 (2%)
Strand=Plus/Plus
Query 617 AAGAAGCTCGAATCGAGGATGCTATACCGAGAGAGGAATGGGAAACATGGTTGAATGATG 676
||||||||| |||||||||||||||||| | ||||||||||||||||||||||| |||||
Sbjct 645 AAGAAGCTCAAATCGAGGATGCTATACCAATAGAGGAATGGGAAACATGGTTGACTGATG 704
Query 677 ATGATGCTGGTGAACA-GAGGA--GTATCATGTTTATGCAAGATAATCGCAATGAGTACA 733
||| || || ||| || | | | ||| ||| |||| ||||| ||||||| | |||
Sbjct 705 ATGGTGTTGATGAGCAGGTGAATCATATTATGAATATGAAAGATGATCGCAACAACCACA 764
Query 734 GACCTCCAAAGTCATTAACTGGTGTCTTCAGTGATTATAGCAGTGATGAT-A--ATGATT 790
| |||| |||| |||| ||||||||||| | ||| |||| ||||||||| | ||||||
Sbjct 765 GGCCTCAAAAGCCATTGACTGGTGTCTTGATTGACGATAGTAGTGATGATGATGATGATT 824
Query 791 CGGATTTGCTATCTGCAACTACGAATTCTATCCAAACTTGGAGCACTTGTGATAGTTTTG 850
| |||||||||||| |||| || |||||||| ||| || ||||||||||||||||||||
Sbjct 825 CTGATTTGCTATCTCCAACAACAAATTCTATTGAAAATTCGAGCACTTGTGATAGTTTTG 884
Query 851 GTAGCTCA 858
||||||||
Sbjct 885 GTAGCTCA 892
> AT1G02220.1 | Symbols: ANAC003, NAC003 | NAC domain containing
protein 3 | chr1:428814-430647 REVERSE LENGTH=1353
Length=1353
Score = 697 bits (377), Expect = 0.0
Identities = 598/697 (86%), Gaps = 45/697 (6%)
Strand=Plus/Plus
Query 1 ATGGAGAA-TCCGGTGGGTTTAAGATTCCGTCCGACCGACGAGGAGATCGTCGTCGATTA 59
||||| || ||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 81 ATGGA-AACTCCTGTGGGTTTAAGATTCTGTCCGACCGACGAGGAGATCGTCGTCGATTA 139
Query 60 CCTCCGACCAAAAAATCTC-GAAAGGGACACGAGCCATGTCGATCGAGTCATTAGCACAG 118
||| | || |||||| || || || ||||||||||||||||||||| |||||| |||||
Sbjct 140 CCTTTGGCCGAAAAAT-TCCGATAGAGACACGAGCCATGTCGATCGATTCATTAACACAG 198
Query 119 TCACTATCCGTAG-CTTTGATCCTTGGGAGTTACCTTGCCAGTCGAGGATCAAACTGAAA 177
|| || || |||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 199 TCCCTGTCTGTAGACTC-GATCCTTGGGAGTTACCTTGCCAGTCAAGGATCAAACTGAAA 257
Query 178 GATGAGTCTTGGTGTTTCTTCAGCCCTAAGGAGAACAAATATGGCAGAGGTGAGCAACAG 237
|||| | |||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 258 GATGTGGCTTGGTGTTTCTTCAGACCTAAGGAGAACAAATATGGCAGAGGTGATCAGCAG 317
Query 238 ATTAGAAAAACGAAATCTGGGTTTTGGAAGATTACTGGAAAACCAAAGGCTATCATGCGT 297
|| |||||||||||||||||||||||||||| |||||| | ||||||| |||||||||||
Sbjct 318 ATGAGAAAAACGAAATCTGGGTTTTGGAAGAGTACTGGCAGACCAAAGCCTATCATGCGT 377
Query 298 AATCGCCAAAAGATCGGTGAGAAAA-GAATTTTGATGTTTTACTAC-AGTAAGGAACTCG 355
||||||||| ||||||||||||||| || |||||||||||||| || ||||||||| ||
Sbjct 378 AATCGCCAACAGATCGGTGAGAAAAAGA-TTTTGATGTTTTAC-ACGAGTAAGGAA-TC- 433
Query 356 GTGGATCCAAATCCGATTGGGTTATGCACGAGTACCACGCTTTCTCTCCTA-CTCAGATG 414
| ||||||||||||||||| ||||||||||||| |||||||| || | ||||||
Sbjct 434 ------C-AAATCCGATTGGGTTATACACGAGTACCACGGTTTCTCTCATAAC-CAGATG 485
Query 415 ATGATGACATACACAATCTGTAAAGTTATGTTTAAGGGTGACGTGAGAGAGAT-TCcttc 473
||||||||||||||| ||||||||||||||||||| |||| | ||||||||| || |||
Sbjct 486 ATGATGACATACACACTCTGTAAAGTTATGTTTAATGGTGGCATGAGAGAGAAGTC-TTC 544
Query 474 tgcttcttcttcttcttcttctCATGGTAGTGGAATTGAGCAGAGTCGTCC---CTCTTT 530
|| ||||| ||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 545 --CT-CTTCTCCTTCTTCTTCTGGTGTTAGTGGAATTGAGCAGAGTCGTCGTGACTCTTT 601
Query 531 AATCCCTCTTCTTGAGAACAATTCTGAGGGATCGTC-CTTTCACAGCCAAGAGTTACAGA 589
|||||||| |||| ||||||||||||||||| || ||| ||||| | || | ||
Sbjct 602 AATCCCTCAGCTTGTCAACAATTCTGAGGGATCCTCACTT-CACAG--A-GA---A--GA 652
Query 590 ATCCAAGTCGGGTTGGTGATGTGCAGCAAGAAGCTCGAATCGAGGATGCTATACCGAGAG 649
|||||||| | |||||||||||| ||||||||||| |||||||||||||| || || |
Sbjct 653 -TCCAAGTCAGTTTGGTGATGTGCTGCAAGAAGCTCCAATCGAGGATGCTAAACTGACCG 711
Query 650 AGGAATGGG-AAACATGG-T--TGAATGATGATGATG 682
|||||| || ||| |||| | |||||||||| ||||
Sbjct 712 AGGAATTGGTAAA-ATGGCTGATGAATGATGAGGATG 747
Score = 684 bits (370), Expect = 0.0
Identities = 472/520 (91%), Gaps = 11/520 (2%)
Strand=Plus/Plus
Query 622 GCTCGAATCGAGGATGCTATACCGAGAGAGGAATGGGAAACATGGTTGAATGATGA-TGA 680
|||| |||||||||||||||||||| ||||||||||||||||||||||||||| | |||
Sbjct 750 GCTCAAATCGAGGATGCTATACCGATTGAGGAATGGGAAACATGGTTGAATGAT-ATTGA 808
Query 681 TGCTGGTGAA-CAGAGGAGTATCATGTTTATGCAAGATAATCGCAA-TGAGTACAGACCT 738
|| || | || ||| |||||||||||||||||| |||||||| || ||| |||||||||
Sbjct 809 TGATGCT-AAGGAGAAGAGTATCATGTTTATGCATGATAATCG-AAGTGATTACAGACCT 866
Query 739 CCAAAGTCATTAACTGGTGTCTTCAGTGAT--T-ATAGCAGTGATGATAATGATTCGGAT 795
||||| |||||||||||||||||||||||| | ||||||||||||||||||||| |||
Sbjct 867 CCAAACTCATTAACTGGTGTCTTCAGTGATGATGTTAGCAGTGATGATAATGATTCTGAT 926
Query 796 TTGCTATCTGCAACTACGAATTCTATCCAAACTTGGAGCACTTGTGATAGTTTTGGTAGC 855
|||||| || ||| || || ||||| ||||||| |||||||||||||||||||||||||
Sbjct 927 TTGCTAACTCCAAAAACAAACTCTATTCAAACTTCGAGCACTTGTGATAGTTTTGGTAGC 986
Query 856 TCAAATCATCGCGTAGACAAAATCAAAGACCTGAAACAATCTCCTAAATCAACAATCAAG 915
|||||||||||| ||||| | |||||||||||| || ||||||||| |||||||||||
Sbjct 987 TCAAATCATCGCATAGACCAGATCAAAGACCTGCAAGAATCTCCTACCTCAACAATCAAC 1046
Query 916 TTAGTGTCACTAACTCAAGAGGTGAGCCAAGCTCTGATAACCAGTATCGATACAC-CCGA 974
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | ||||
Sbjct 1047 TTAGTGTCACTAACTCAAGAGGTGAGCCAAGCTCTAATAACCAGTATTGATAC-CGCCGA 1105
Query 975 GAAGAAGAAGAATCCTTCTAATGATGCACAAGAGACTGAGATTGGAGAGCATAAATTGGG 1034
||||||||||||||||| | |||||||||||| |||||||||||| ||||||||||||||
Sbjct 1106 GAAGAAGAAGAATCCTTATGATGATGCACAAGGGACTGAGATTGGTGAGCATAAATTGGG 1165
Query 1035 TCAAGAGACGATCAAGAAGAAAAGTGCTGGTTTCTTTCACAGGATGATACAAAAATTCGT 1094
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1166 TCAAGAGACGATCAAGAAGAAAAGAGCTGGTTTCTTTCACAGGATGATACAAAAATTCGT 1225
Query 1095 CAAGAAAATTCACCTTTGTTCTTCTATCTCAAGAACTTGA 1134
||||||||||||||| |||||||| |||||||||||||||
Sbjct 1226 CAAGAAAATTCACCTATGTTCTTCCATCTCAAGAACTTGA 1265
> AT1G02250.1 | Symbols: anac005, NAC005 | NAC domain containing
protein 5 | chr1:437951-439559 REVERSE LENGTH=1089
Length=1089
Score = 195 bits (105), Expect = 1e-48
Identities = 113/117 (97%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 993 TAATGATGCACAAGAGACTGAGATTGGAGAGCATAAATTGGGTCAAGAGACGATCAAGAA 1052
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 963 TAATGATGCACAAGGGACTGAGATTGGTGAGCATAAATTGGGTCAAGAGACGATCAAGAA 1022
Query 1053 GAAAAGTGCTGGTTTCTTTCACAGGATGATACAAAAATTCGTCAAGAAAATTCACCT 1109
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 CAAAAGAGCTGGTTTCTTTCACAGGATGATACAAAAATTCGTCAAGAAAATTCACCT 1079
> AT3G04410.1 | Symbols: | NAC (No Apical Meristem) domain transcriptional
regulator superfamily protein | chr3:1168837-1169205
FORWARD LENGTH=231
Length=231
Score = 174 bits (94), Expect = 1e-42
Identities = 108/115 (94%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 694 AGGAGTATCATGTTTATGCAAGATAATCGCAATGAGTACAGACCTCCAAAGTCATTAACT 753
|||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 103 AGGAATATCATGTTTATGCAAGATAATCGCAATGATTACAGACCTCCAAACTCATTAACT 162
Query 754 GGTGTCTTCAGTGATTATAGCAGTGATGATAATGATTCGGATTTGCTATCTGCAA 808
|||||||||||||||| ||||||||||||||||||||| ||||| |||||| |||
Sbjct 163 GGTGTCTTCAGTGATTGTAGCAGTGATGATAATGATTCTGATTTACTATCTCCAA 217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55622203860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5