BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311338
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02280.1 | Symbols: TOC33, ATTOC33, PPI1 | translocon at the... 1513 0.0
> AT1G02280.1 | Symbols: TOC33, ATTOC33, PPI1 | translocon at the
outer envelope membrane of chloroplasts 33 | chr1:448463-450425
REVERSE LENGTH=1173
Length=1173
Score = 1513 bits (819), Expect = 0.0
Identities = 871/896 (97%), Gaps = 4/896 (0%)
Strand=Plus/Plus
Query 1 ATGGGGTCTCTCGTTCGTGAATGGGTTGGGTTTCAGCAGTTTCCAGCAGCTACCCAGGAA 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 78 ATGGGGTCTCTCGTTCGTGAATGGGTTGGGTTTCAGCAATTTCCAGCAGCTACCCAGGAA 137
Query 61 AAGCTGATTGAATTCTTTGGCAAATTGAAGCAAAAGGATATGAACTCAATGACAGTTCTT 120
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 138 AAGCTGATTGAATTCTTCGGAAAATTGAAGCAAAAGGATATGAACTCAATGACAGTTCTT 197
Query 121 GTTCTTGGG-AAAGGTGGTGTCGGAAAATCATCTACTGTCAATTCTCTTATCGGTGAACA 179
|||| |||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 198 GTTC-TGGGTAAAGGCGGTGTCGGAAAATCATCCACTGTCAATTCTCTTATCGGCGAACA 256
Query 180 AGTCGTCCGTGTCAGTCCTTTCCAGGCTGAAGGATTGAGACCAGTGATGGTTTCAAGAAC 239
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 257 AGTCGTCCGTGTCAGTCCTTTCCAAGCTGAAGGATTGAGACCAGTGATGGTTTCAAGAAC 316
Query 240 AATGGGAGGGTTCACTATCAACATTATTGACACCCCTGGACTTGTGGAAGCTGGATATGT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 AATGGGAGGGTTCACTATCAACATTATTGACACCCCTGGACTTGTGGAAGCTGGATATGT 376
Query 300 CAATCACCAAGCCCTCGAGTTAATCAAAGGGTTTCTTGTGAACAGAACCATAGATGTCTT 359
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 377 CAATCACCAAGCTCTCGAGTTAATCAAAGGGTTTCTTGTGAACAGAACAATAGATGTCTT 436
Query 360 GCTCTATGTTGATCGTTTGGATGTGTATAGAGTCGATGAGCTAGATAAGCAAGTTGTGA- 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 437 GCTCTATGTTGATCGTTTGGATGTGTATAGAGTCGATGAGCTAGATAAGCAAGTTGTTAT 496
Query 419 AGGCAATCACCCAAACCTTTGGAAAAGAGATTTGGTGCAAAACCTTGCTTGTTCTGACTC 478
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 497 AG-CAATCACCCAAACCTTTGGAAAAGAGATATGGTGCAAAACCTTGCTTGTTCTGACTC 555
Query 479 ATGCTCAGTTTTCCCCTCCCGATGAACTTTCCTACGAAACTTTTTCCTCCAAGAGATCAG 538
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 ATGCTCAATTTTCCCCTCCCGATGAACTTTCCTACGAAACTTTTTCCTCCAAGAGATCAG 615
Query 539 ATTCTCTTCTCAAAACTATCCGTGCTGGTTCTAAAATGCGAAAACAAGAGTTTGAGGATT 598
||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 616 ATTCTCTCCTCAAAACTATCCGGGCTGGTTCTAAGATGCGAAAACAAGAGTTTGAGGATT 675
Query 599 CTGCAATCGCGGTAGTCTATGCAGAGAACAGCGGAAGATGCAGCAAGAACGATAAGGACG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 CTGCAATCGCGGTAGTCTATGCAGAGAACAGCGGAAGATGCAGCAAGAACGATAAGGACG 735
Query 659 AAAAGGCTCTTCCGAATGGTGAAGCATGGATCCCGAACTTGGTTAAGGCGATAACTGATG 718
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 736 AAAAGGCTCTTCCAAATGGTGAAGCGTGGATCCCGAACTTGGTTAAGGCGATAACTGATG 795
Query 719 TAGCAACAAACCAGAGAAAAGCAATTCATGTAGACAAGAAGATGGTAGATGGATCTTACT 778
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 TAGCAACAAACCAGAGGAAAGCAATTCATGTAGACAAGAAGATGGTAGATGGATCTTACT 855
Query 779 CTGATGATAAAGGAAAGAAACTCATCCCTCTTATCATCGGCGTTCAGTATTTGATCGTTA 838
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 856 CTGATGATAAAGGAAAGAAACTCATCCCTCTTATCATAGGCGCTCAGTATTTGATCGTTA 915
Query 839 AGATGATTCAAGGAGCAATCAGAAATGACATCAAGACAAGTGGAAAGCCACTTTAA 894
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 916 AGATGATTCAAGGAGCAATCAGAAATGATATCAAGACAAGTGGAAAGCCACTTTAA 971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43653473743
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5