BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311357
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02475.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 870 0.0
> AT1G02475.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr1:513843-515404 REVERSE
LENGTH=929
Length=929
Score = 870 bits (471), Expect = 0.0
Identities = 615/678 (91%), Gaps = 36/678 (5%)
Strand=Plus/Plus
Query 1 ATGTCTGTAGTAGCAATTAACATGAACACGATCAATCACTTGTCCAAAACCTGTAAAATC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 74 ATGTCTGTAGTAGCAATTAACATGAACACGATCAATCACTTGTCCAAAACCTGTAAAACC 133
Query 61 CCAAATATCCAATCACCAATTTGCTTCGATCGCAAACCCTCTTCATATTCTCTCATTCCT 120
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 134 CCAAATATCCAATCACCGATTTGCTTCGATCGCAAACCCTTTTCATATTCTCTCATTCCT 193
Query 121 CTGTTTCCAAAAACCCTAAATGGCTTCTC-T-T-ACTCTTCTTCCGTTAGTCGGAGATCG 177
||||||||||||||||||||||||||||| | | ||||||||||||||||||| ||||||
Sbjct 194 CTGTTTCCAAAAACCCTAAATGGCTTCTCCTCTTACTCTTCTTCCGTTAGTCGCAGATCG 253
Query 178 AGTTTCATCATTCCCAAGAGACGACCATTCTCTGTTTCCATGGA-----A-G--T----A 225
|| |||||||||||||||||||||| |||||||||||||||||| | | | |
Sbjct 254 AGATTCATCATTCCCAAGAGACGACGATTCTCTGTTTCCATGGAGTGGCAAGACTGCTCA 313
Query 226 --AA-GATGGAAGTAGATGTTCCAGTCTCAGTAGCGTATAATTTCTACTTGGATCGTGAA 282
|| |||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 314 GTAAAGATGGAGGTCGATGTTCCAGTATCAGTAGCGTATAATTTCTACTTGGATCGTGAA 373
Query 283 TCGTTTCCTAAATGGATGCCTTTTATTTCTTCTGTCGAGGTGTTAAAGGACAAGCCTGAT 342
|| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 374 TCTTTTCCTAAATGGATGCCTTTTATTTCATCTGTCCAGGTGTTAAAGGACAAGCCTGAT 433
Query 343 CTATCACGTTGGTCACTCAAATACAATGCTTTTGGTCAAGACATTAAGTATTCTTGGCTT 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 CTATCACGTTGGTCACTCAAATACAATGCTTTTGGTCAAGACATTAAGTATTCTTGGCTT 493
Query 403 GCTCGGAATCTACAGGCAAGAATCCATCATTCACCTACTCCTAATCAGAAAATCCATTGG 462
||||| ||||| ||| | | | | | | | | |||||||||||||||||||
Sbjct 494 GCTCGTAATCTTCAG-C------C--T-A--C---T-C-C-TAATCAGAAAATCCATTGG 535
Query 463 AGATCTCTTGAAGGTCTTCCTAATAAAGGCAGCGTTCGATTCTTCCCCAAAGGTCCTTCA 522
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 536 AGATCTCTTGAAGGTCTTCCTAATAAAGGCAGCGTTCGATTCTTTCCTAAAGGTCCTTCA 595
Query 523 TCGTGCATCGTAGAACTAACTGTATCATATGAAGTCCCTGCGCTATTGACCCCGGTTGCA 582
|||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| || |||
Sbjct 596 TCGTGCATCGTAGAGCTAACCGTATCATATGAAGTCCCTGCCCTATTAACCCCTGTGGCA 655
Query 583 TCGGTGCTCCGACCTTTTTTAGAAAGCTTGCTTAGAGGTGGACTTGAAAGATTTGCAGCC 642
||||| || || |||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 656 TCGGTACTACGGCCTTTTATAGAAAGCTTGCTTAGAGGTGGACTTGAACGATTTGCAGCC 715
Query 643 TTGGCCAAAACTACTTAA 660
||||||||||||||||||
Sbjct 716 TTGGCCAAAACTACTTAA 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31898683345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5