BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311362
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02575.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 970 0.0
AT1G02570.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 713 0.0
> AT1G02575.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G02570.1).
| chr1:543110-544007 FORWARD LENGTH=898
Length=898
Score = 970 bits (525), Expect = 0.0
Identities = 598/633 (94%), Gaps = 5/633 (1%)
Strand=Plus/Plus
Query 651 GGCCGATGTCGGAGTCTTATACACGATCTTGTTTCTCATCATCGTCTTCACTTTAATCCA 710
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 GGCAGATGTCGGAGTCTTATACACGATCTTGTTTCTCATCATCGTCTTCACTTTAATCCA 288
Query 711 CAGTCTCTTAGGTAAACCAGAATGCTCTGTTCTCCATTCCCATCTCTACATCTGCTGGAT 770
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 CAGTCTCTCAGGAAAACCAGAATGCTCTGTTCTCCATTCCCATCTCTACATCTGCTGGAT 348
Query 771 CGTTCTCTTCATCGCCCAAGCTTGTGCCTTCGGAATCAAAAGAACCATGAGCACGACCAT 830
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 349 CGTTCTCTTCATCGCCCAAGCTTGTGCCTTTGGGATCAAAAGAACCATGAGCACGACCAT 408
Query 831 GTCTATAAATCCAGACAAAAACTTGTTTCTTGCGACACATGAAAGATGTG-TGCTGGTTA 889
|||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||
Sbjct 409 GTCTATAAATCCAGACAAAAACTTGTTTCTTGCGACACATGAAAGATG-GATGTTGGTTA 467
Query 890 GGGTTTTGTTCGTTTTGGGGCTACACGAAGTGATGCTGATGTGGTTTAGAGTCGTGGTTA 949
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GGGTTTTGTTCTTTTTGGGGCTACACGAAGTGATGCTGATGTGGTTTAGAGTCGTGGTTA 527
Query 950 AGCCTGTGGTTGACAAAACTATATATGGGGTTTACGTGGAGGAGAGGTGGTCCGAGAGAG 1009
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 528 AGCCTGTGGTTGACAACACTATATATGGGGTCTACGTGGAGGAGAGGTGGTCCGAGAGAG 587
Query 1010 CCGTTGTGGCACTGACCTTTGGTCTAATGTGGTGGTGGAGGCTAAGAGATGAGGTAGAAA 1069
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 588 CCGTTGTGGCAGTGACCTTTGGTATAATGTGGTGGTGGAGGCTAAGAGATGAGGTAGAAA 647
Query 1070 GTCTTGTGGTGGTGGTTACAGAGGATAAACGTGACCTCCCCATTCGTTTGGTGGGTCTCA 1129
||||||||||||||||||| | ||||| || | |||||||||||||||||| ||||||||
Sbjct 648 GTCTTGTGGTGGTGGTTACGGCGGATAGACTTAACCTCCCCATTCGTTTGGAGGGTCTCA 707
Query 1130 GTTTTGTGAACTGGTGTATGTATTACATCTGTGTTGGAATTGGTTTGGTGAAGATCTTCA 1189
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 708 ATTTTGTGAACTGGTGTATGTATTACATCTGTGTTGGAATTGGTTTAATGAAGATCTTCA 767
Query 1190 AAGGGTTTTTGTATTTTGTGAACATGTTAATCTT-GACCATTAGGAGATCGAGAAAAGGC 1248
||||||||||| |||||||||| | ||| | ||| || ||||| ||| ||||||||||||
Sbjct 768 AAGGGTTTTTGGATTTTGTGAATACGTTGA-CTTTGAGCATTAAGAGGTCGAGAAAAGGC 826
Query 1249 TGCGAATCGTGTGTTGTTGATGATCATGTGTAA 1281
|| ||||| |||||| |||||||| ||||||||
Sbjct 827 TGTGAATCATGTGTTTTTGATGAT-ATGTGTAA 858
Score = 462 bits (250), Expect = 3e-129
Identities = 365/419 (87%), Gaps = 13/419 (3%)
Strand=Plus/Plus
Query 1 ATGGAACATGAAGAAACACAGAAGAACACAAGAAGCAGCTGGTCACC-GCTTCGACCATT 59
|||||||||||||||||||| ||||||||||||| ||||||||| || | ||||||||||
Sbjct 44 ATGGAACATGAAGAAACACAAAAGAACACAAGAAACAGCTGGTC-CCTGATTCGACCATT 102
Query 60 TCAAATGAtctccattagccttcttagtctccttgtccctctctctttcctcttcctttc 119
||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||| |||||
Sbjct 103 TCAAATGATCTCCATTAGCTTTCTTAGCCTCCTCCTCCCTCTATCTTTCCTCTTTCTTTC 162
Query 120 acgtctctctgtttcct-cctcctcagctccAGTCACCATTTCCGGCGTATT-GTCCCTT 177
|||||||||| | | | |||||||| |||| |||||| | |||||||| || || ||
Sbjct 163 ACGTCTCTCTCTCT-ATACCTCCTCAACTCCGGTCACCGTCTCCGGCGT-TTCCTCTGTT 220
Query 178 CTTCACCAGGCCGATGTCGGAGTTTTATACACAATCTTGTCTCTTATCATAGTCTCCACT 237
|||||||||| ||||||||||| |||||||| ||||||| ||| ||||| |||| ||||
Sbjct 221 ATTCACCAGGCAGATGTCGGAGTCTTATACACGATCTTGTTTCTCATCATCGTCTTCACT 280
Query 238 TTAATCCACAATCTCTTC-GGAAAACCAGAATGCTCTGTTCTCCATTCCTATCTCTACAT 296
|||||||||| |||| || |||||||||||||||||||||||||||||| ||||||||||
Sbjct 281 TTAATCCACAGTCTC-TCAGGAAAACCAGAATGCTCTGTTCTCCATTCCCATCTCTACAT 339
Query 297 CTGCTGGATTGTTCTCTTCATCGTCCAAGCTTGTGTCGCCTTTGGAATCGAAGGAACCAT 356
||||||||| ||||||||||||| ||||||||||| | | ||||| ||| || |||||||
Sbjct 340 CTGCTGGATCGTTCTCTTCATCGCCCAAGCTTGTG-C-C-TTTGGGATCAAAAGAACCAT 396
Query 357 GAGCACGACCGTTTCTATAAA-CACAGACAAAAGCTTGTCTCTTGCGGCTCAAGAAAGA 414
|||||||||| | |||||||| | ||||||||| ||||| ||||||| | || ||||||
Sbjct 397 GAGCACGACCATGTCTATAAATC-CAGACAAAAACTTGTTTCTTGCGACACATGAAAGA 454
Score = 226 bits (122), Expect = 4e-58
Identities = 200/237 (84%), Gaps = 8/237 (3%)
Strand=Plus/Plus
Query 412 AGAGTAGTGGTTAAGCCGGTGGTCGACGACACTGT-TTTCGGGGTTTACATGGAGGAAGA 470
||||| ||||||||||| ||||| ||| ||||| | | | ||||| ||| |||||| |||
Sbjct 515 AGAGTCGTGGTTAAGCCTGTGGTTGACAACACTATATAT-GGGGTCTACGTGGAGG-AGA 572
Query 471 GAGATGGTCGGAGAGAACCGTCGTGGCGGTGACTTTTGGTCTAATGTGGTGGTGGAGGCT 530
| | ||||| |||||| |||| ||||| ||||| |||||| |||||||||||||||||||
Sbjct 573 G-G-TGGTCCGAGAGAGCCGTTGTGGCAGTGACCTTTGGTATAATGTGGTGGTGGAGGCT 630
Query 531 AAGAGATGAGGTAGAAAGTCT-G-G-TGGTGGTTGCAGAGGTTAAACGTAGCCTTCTGAT 587
||||||||||||||||||||| | | |||||||| | | || || || || ||| | ||
Sbjct 631 AAGAGATGAGGTAGAAAGTCTTGTGGTGGTGGTTACGGCGGATAGACTTAACCTCCCCAT 690
Query 588 ACATTTGGAGGGTCTCGATTTTGTAAACTGGTGGATGTATTACATCTGTGTTGGAAT 644
| ||||||||||||| ||||||| |||||||| |||||||||||||||||||||||
Sbjct 691 TCGTTTGGAGGGTCTCAATTTTGTGAACTGGTGTATGTATTACATCTGTGTTGGAAT 747
> AT1G02570.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G02575.1);
Has 108 Blast hits to 55 proteins in 6 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:541335-542240
FORWARD LENGTH=906
Length=906
Score = 713 bits (386), Expect = 0.0
Identities = 559/641 (87%), Gaps = 18/641 (3%)
Strand=Plus/Plus
Query 651 GGCCGATGTCGGAGTCTTATACACGATCTTGTTTCTCATCATCGTCTTCACTTTAATCCA 710
||||||||||||| |||||||||| ||||||| ||||||||||||| ||||||||||||
Sbjct 231 GGCCGATGTCGGAATCTTATACACAATCTTGTCCCTCATCATCGTCTCCACTTTAATCCA 290
Query 711 CAGTCTCTTAGGTAAACCAGAATGCTCTGTTCTCCATTCCCATCTCTACATCTGCTGGAT 770
|| ||||| || |||||||| ||||||||||| ||||||||||| ||||| ||||||||
Sbjct 291 CATTCTCTCCGGGAAACCAGAGTGCTCTGTTCTGCATTCCCATCTATACATTTGCTGGAT 350
Query 771 CGTTCTCTTCATCGCCCAAGC-T-TGT-GCCTTCGGAATCAAAAGAACCATGAGCACGAC 827
|||||||||||||| ||||| | ||| |||||||||||| || ||||||||||||||||
Sbjct 351 CGTTCTCTTCATCGTTCAAGCTTGTGTCGCCTTCGGAATCGAAGGAACCATGAGCACGAC 410
Query 828 CATGTCTATAAATCCAGACAAAAACTTGTT-TCTTGC-GACACATGAAAGATGTGTGCTG 885
||| ||||| || ||||||||| ||| || |||||| | | || ||||| || || ||
Sbjct 411 CATTTCTATCGATACAGACAAAAGCTT-TTCTCTTGCTG-CTCAAGAAAGGTGGGTTTTG 468
Query 886 GTTAGGGTTTTGTTCGTTTTGGGGCTACACGAAGTGATGCTGATGTGGTTTAGAGTCGTG 945
||||||||| ||||| ||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 469 GTTAGGGTTATGTTCTTTTTGGGCCTACACGAAGTGATGCTAATGTGGTTCAGAGTCGTG 528
Query 946 GTTAAGCCTGTGGTTGACAAAACTATATATGGGGTTTACGTGGAGGA-GAG-G-TGGTCC 1002
|||||||| ||| ||||| | ||| | | |||||||||||||||||| ||| | |||||
Sbjct 529 GTTAAGCCGGTGATTGACGACACTGTGTTTGGGGTTTACGTGGAGGAGGAGAGATGGTCG 588
Query 1003 GAGAGAGCCGTTGTGGCACTGACCTTTGGTCTAATGTGGTGGTGGAGGCTAAGAGATGAG 1062
|||||||| || ||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 589 GAGAGAGCTGTCGTGGCGGTGACTTTTGGTCTAATGTGGTGGTGGAGGCTAAGAGATGAG 648
Query 1063 GTAGAAAGTCTTGTGGTGGTGGTTACAGAGGATAAACGTGACCTCCCCATTCGTTTGGTG 1122
||||||||| ||| | |||||||| |||||| ||||||| |||| | || ||||||| |
Sbjct 649 GTAGAAAGT-TTG-G-TGGTGGTTGCAGAGGTTAAACGTAACCTTCAGATACGTTTGGAG 705
Query 1123 GGTCTC-AGTTTTGTGAACTGGTGTATGTATTACATCTGTGTTGGAATTGGTTTGGTGAA 1181
|||||| | ||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 706 GGTCTCGA-TTTTGTGAACTGGTGGATGTATTACATCTGTGTTGGAATTGGCTTGGTGAA 764
Query 1182 GATCTTCAAAGGGTTTTT-GTATTTTGTGAACATGTTAATCTTGACCATTAGGAGATCGA 1240
||||||||| |||||||| |||||||||||| |||||||| |||||||||| || ||||
Sbjct 765 GATCTTCAA-GGGTTTTTTGTATTTTGTGAATATGTTAATTTTGACCATTAATAGGTCGA 823
Query 1241 GAAAAGGCTGCGAATCGTGTGTTGTTGATGATCATGTGTAA 1281
||||| |||| ||||||||| ||||||||||| ||||||||
Sbjct 824 GAAAATGCTGTGAATCGTGTCTTGTTGATGAT-ATGTGTAA 863
Score = 363 bits (196), Expect = 3e-99
Identities = 227/242 (94%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 412 AGAGTAGTGGTTAAGCCGGTGGTCGACGACACTGT-TTTCGGGGTTTACATGGAGGAAGA 470
||||| ||||||||||||||| | ||||||||||| ||| ||||||||| ||||||| ||
Sbjct 520 AGAGTCGTGGTTAAGCCGGTGATTGACGACACTGTGTTT-GGGGTTTACGTGGAGGAGGA 578
Query 471 GAGATGGTCGGAGAGAACCGTCGTGGCGGTGACTTTTGGTCTAATGTGGTGGTGGAGGCT 530
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 579 GAGATGGTCGGAGAGAGCTGTCGTGGCGGTGACTTTTGGTCTAATGTGGTGGTGGAGGCT 638
Query 531 AAGAGATGAGGTAGAAAGTCTGGTGGTGGTTGCAGAGGTTAAACGTAGCCTTCTGATACA 590
||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||
Sbjct 639 AAGAGATGAGGTAGAAAGTTTGGTGGTGGTTGCAGAGGTTAAACGTAACCTTCAGATACG 698
Query 591 TTTGGAGGGTCTCGATTTTGTAAACTGGTGGATGTATTACATCTGTGTTGGAATAGGCTT 650
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 699 TTTGGAGGGTCTCGATTTTGTGAACTGGTGGATGTATTACATCTGTGTTGGAATTGGCTT 758
Query 651 GG 652
||
Sbjct 759 GG 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001683975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5