BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311385
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA... 1177 0.0
AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/R... 675 0.0
> AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-binding
(RRM/RBD/RNP motifs) family protein | chr1:626741-629819
FORWARD LENGTH=1241
Length=1241
Score = 1177 bits (637), Expect = 0.0
Identities = 775/835 (93%), Gaps = 36/835 (4%)
Strand=Plus/Plus
Query 1 ATGAGCAGCCGTTCGAGTAGAACCGTGTACGTTGGAAACCTTCCTGGCGATATCCGTGAG 60
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 94 ATGAGCAGTCGTTCGAGTAGAACCGTGTACGTCGGAAACCTTCCTGGCGATATCCGTGAG 153
Query 61 AGAGAGGTTGAAGATTTGTTCAGTAAGTATGGACCTGTTGTTCAAATTGATTTGAAGGTC 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 AGAGAGGTCGAAGATTTGTTCAGTAAGTATGGACCTGTTGTTCAAATTGATTTGAAGGTT 213
Query 121 CCTCCAAGGCCTCCTGGTTATGCATTCGTTGAGTTTGATGATGCTCGGGATGCTGAAGAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 CCTCCAAGGCCTCCTGGTTATGCATTCGTTGAGTTTGATGATGCTCGGGATGCTGAAGAT 273
Query 181 GCTATTCAAGGTCGGGATGGCTATGACTTTGATGGGCATCGTTTGCGGGTGGAATTGGCG 240
|||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 274 GCTATTCATGGTCGTGATGGCTATGACTTTGATGGGCATCGTTTGAGGGTGGAATTGGCG 333
Query 241 CATGGTGGGAGGCGTTCATCAGATGATACTAGGGGTAGTTTCAAtggtggtggccgtggt 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 334 CATGGTGGGAGGCGTTCATCAGATGATACTCGGGGTAGTTTCAATGGTGGTGGCCGTGGT 393
Query 301 ggtggacgtggccgcggtgatggccgtggtgatggtggtagtcgtggccCATCTAGGAGA 360
||| | || ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 394 GGT-G--GT---CGC------GGCCGTGGTGATGGTGGTAGTCGTGGGCCATCTAGGAGA 441
Query 361 TCAGAGTTTCGTGTTCTGGTCACAGGCTTGCCTTCTTCTGCTTCTTGGCAAGATCTCAAG 420
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 442 TCAGAGTTTCGTGTTCTAGTCACAGGCTTGCCTTCATCTGCTTCTTGGCAAGATCTCAAG 501
Query 421 GATCACATGCGTAAAGGAGGGGACGTCTGTTTCTCGCAAGTGTACCGTGATGGTAGAGGT 480
|||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||
Sbjct 502 GATCACATGCGTAAAGGAGGCGATGTCTGTTTCTCGCAAGTGTACCGTGATGCTAGAGGG 561
Query 481 ACAACTGGAGTTGTCGATTACACCTGCTATGAGGACATGAAGTATGCGGTGAAAAAGCTC 540
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 562 ACAACTGGAGTTGTTGATTACACCTGCTATGAGGACATGAAGTATGCGCTGAAAAAGCTC 621
Query 541 GACGACACAGAGTTTCGAAATGCGTTTTCTCATGGATATGTTCGGGTTAGAGAATACGAT 600
||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||
Sbjct 622 GACGACACAGAGTTTCGAAATGCGTTTTCGAATGGATATGTCCGGGTTAGAGAATATGAT 681
Query 601 TCAAGGAAGGATTCTAGGAGTCCTAGCCGGGGAAGATCCTATTCTAGGAGTCGCAGCCGC 660
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 682 TCAAGGAAGGATTCTAGGAGTCCTAGCCGGGGAAGATCCTATTCTA--AG----AGCCGC 735
Query 661 AGCCGCAGCCGTGGGCGAAGCTTGAGCCGAagcaggagcaggagcaggagcagaagcagg 720
|||||||||||||| |||||| ||||||||||||||||||| | || ||| | ||
Sbjct 736 AGCCGCAGCCGTGGACGAAGCGTGAGCCGAAGCAGGAGCAG-A--AG---CAG--G-AG- 785
Query 721 agcaggagcaggagcaggagTCCAAAGGCAAAGTCTTCACGTAGGTCCCCTGCAAAATCT 780
||||||||| | || ||| ||||||||||||||||||||||||||||||||||||
Sbjct 786 --CAGGAGCAG-A--AG---TCCCAAGGCAAAGTCTTCACGTAGGTCCCCTGCAAAATCT 837
Query 781 ACATCAAGATCTCCTGGCCCCCGCTCGAAGTCAAGGTCACCGTCTCCAAGAAGAT 835
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ACATCAAGATCTCCTGGCCCCCGCTCGAAGTCAAGGTCACCGTCTCCAAGAAGAT 892
> AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr4:1068974-1072183 FORWARD LENGTH=1513
Length=1513
Score = 675 bits (365), Expect = 0.0
Identities = 713/872 (82%), Gaps = 60/872 (7%)
Strand=Plus/Plus
Query 1 ATGAGCAGCCGTTCGAGTAGAACCG-TGTACGTTGGAAACCTTCCTGGCGATATCCGTGA 59
|||||||||||||||||||||| || | ||||| || |||||||| ||||||||||||||
Sbjct 49 ATGAGCAGCCGTTCGAGTAGAA-CGATTTACGTCGGGAACCTTCCCGGCGATATCCGTGA 107
Query 60 GAGAGAGGTTGAAGATTTGTTCAGTAAGTATGGACCTGTTGTTCAAATTGATTTGAAGGT 119
||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 108 AAGAGAAGTTGAAGACTTGTTCAGTAAGTATGGACCTGTTGTTCAAATCGATTTGAAGAT 167
Query 120 CCCTCCAAGGCCTCCTGGTTATGCATTCGTTGAGTTTGATGATGCTCGGGATGCTGAAGA 179
|| || |||||||| || ||||||||||| |||||||| |||||||| |||||||| ||
Sbjct 168 TCCGCCGAGGCCTCCAGGCTATGCATTCGTCGAGTTTGAGGATGCTCGTGATGCTGATGA 227
Query 180 TGCTATTCAAGGTCGGGATGGCTATGACTTTGATGGGCATCGTTTGCGGGTGGAATTGGC 239
||| ||| | || || ||||| ||||||||||||||||||| ||| ||||||||| | ||
Sbjct 228 TGCAATTTATGGCCGTGATGGTTATGACTTTGATGGGCATCATTTACGGGTGGAACTAGC 287
Query 240 GCATGGTGGGAGGCGTTCATCAGATGATACTAGG-GGTAGTT-TCAAtggtggtggccgt 297
||||||||||||||||||||| ||||| | | | ||||||| | | |||| |||| |||
Sbjct 288 TCATGGTGGGAGGCGTTCATCACATGATGC-ACGCGGTAGTTAT-AGTGGTCGTGGTCGT 345
Query 298 ggtggtggacgtggccgcggtgatggccgtggtgatggtggtagtcgtggccCATCTAGG 357
|| ||| ||||| | ||||| || ||||| | ||| | ||||| |||||||||
Sbjct 346 GGCGGT---CGTGGTGGTGGTGACGG---TGGTGGTCGTGA-A--CGTGGACCATCTAGG 396
Query 358 AGATCAGAGTTTCGTGTTCTGGTCACAGGCTTGCCTTCTTCTGCTTCTTGGCAAGATCTC 417
|||||||||| || ||| | || |||| |||||||| ||||| || |||||||| |||
Sbjct 397 AGATCAGAGTACCGCGTTGTAGTGTCAGGTTTGCCTTCATCTGCGTCCTGGCAAGACCTC 456
Query 418 AAGGATCACATGCGTAAAGGAGGGGACGTCTGTTTCTCGCAAGTGTACCGTGATGGTAGA 477
||||||||||||||||||||||| || || ||||| || ||||||| ||||||||||||
Sbjct 457 AAGGATCACATGCGTAAAGGAGGAGAAGTTTGTTTTTCTCAAGTGTTTCGTGATGGTAGA 516
Query 478 GGTACAACTGGAGTTGTCGATTACACCTGCTATGAGGACATGAAGTATGCGGTGAAAAAG 537
|||||||||||| |||| ||||| ||| |||| ||||||||||| ||||||
Sbjct 517 GGTACAACTGGAATTGTAGATTATACCAGCTACGAGGACATGAAATATGCG--------- 567
Query 538 CTCGACGACACAGAGTTTCGAAATGCGTTTTCTCATGGATATGTTCGGGTTAGAGAATAC 597
||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 568 CTCGATGACACAGAGTTTCGGAATGCGTTTTCTCATGAATATGTTCGGGTTAGAGAATAT 627
Query 598 GATTCAAGGAAGGATTCTAGGAGTCCTAGCCGGGGAAGATCCTATTCTAGGAGTCGCAGC 657
|||||||||| |||||| ||||| || ||||| |||||||||||||||| || |||
Sbjct 628 GATTCAAGGAGGGATTCGAGGAGCCCCAGCCGTGGAAGATCCTATTCTA--AG----AGC 681
Query 658 CGCAGCCGCAGCCGTGGGCGAAGCTTGAGCCGAagcaggag-caggagcaggagcagaag 716
|||||||| ||| || || | || | || | || | | ||| | ||||||||
Sbjct 682 CGCAGCCG------TGGACGGAG-TC---CC-A-GCCGTAGTC-GTAGCCGCAGCAGAAG 728
Query 717 caggagcaggagcaggagcaggagTCCAAAGGC-AAAGTCTTCACGTAGGTCCCCTGCAA 775
|||||||| |||||| | || ||||||||| ||| |||| ||||| || |||||||
Sbjct 729 CAGGAGCAAGAGCAG-A--AG---TCCAAAGGCTAAA-TCTTTGCGTAGATCGCCTGCAA 781
Query 776 AATCTACATCAAGATCTCCTGGC-C-C-C-C--GCTCGAAGTCAAGGTCACCGTCTCCAA 829
|||||||||| ||||||||| || | | | | |||| ||||| ||||||| |||||||
Sbjct 782 AATCTACATCGAGATCTCCTCGCTCTCGCTCCCGCTCTAAGTCGAGGTCACTGTCTCCAC 841
Query 830 GAAGATGGATAACAGTGGAGA--CATTGGATC 859
|| ||||| |||||||||||| |||||||||
Sbjct 842 GAGGATGGGTAACAGTGGAGAGACATTGGATC 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43653473743
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5