BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311398
Length=2220
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02980.1 | Symbols: CUL2, ATCUL2 | cullin 2 | chr1:677869-68... 2852 0.0
AT1G43140.1 | Symbols: | Cullin family protein | chr1:16232785... 1735 0.0
AT4G02570.1 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 | chr4:112... 1598 0.0
AT1G59800.1 | Symbols: | Cullin family protein | chr1:22004964... 357 3e-97
> AT1G02980.1 | Symbols: CUL2, ATCUL2 | cullin 2 | chr1:677869-681310
FORWARD LENGTH=2327
Length=2327
Score = 2852 bits (1544), Expect = 0.0
Identities = 2006/2227 (90%), Gaps = 39/2227 (2%)
Strand=Plus/Plus
Query 18 TGTGTTGGAGGAAGGATGGCCCT-TCATGGAGGCTGGTGTTACAAAGCTACATAGGATTC 76
||||||||||| ||||||| || ||||||||||||||||| |||||||||| | |||||
Sbjct 18 TGTGTTGGAGGCAGGATGG-TCTGTCATGGAGGCTGGTGTTGCAAAGCTACAAAAGATTC 76
Query 77 TGGAAGAATTGCC---TGAGCCAGCATTTGAGTCGGTTCAATATATGAATCTGTACACGA 133
|||||||| |||| ||||||| ||||||| |||||||| |||| | ||||||||||
Sbjct 77 TGGAAGAAGTGCCTGATGAGCCACCATTTGACCCGGTTCAACGTATGCAGCTGTACACGA 136
Query 134 CTATCTACAATATGTGTGTCCAGAAACCTCCTCATGATTTCTCACAGCAGCTTTATGATA 193
|| || ||||| ||||| ||||||||||||| |||||| |||||||||| | ||||||
Sbjct 137 CTGTCCACAATCTGTGTACCCAGAAACCTCCTAATGATTACTCACAGCAGATCTATGATC 196
Query 194 AGTATCGTGGAGTAAT-TGATGATTACAATAAACAAACAGTGTTGCCGGCTATAAG-GAA 251
|||| ||||||| || || |||||||||||||||||| ||||||||||||||| | | |
Sbjct 197 GGTATGGTGGAGT-ATATGTTGATTACAATAAACAAACTGTGTTGCCGGCTATACGTG-A 254
Query 252 GAAGCATGGTGAATATATGCTGAGAGAGCTTGTTAAGAGATGGGCTAACCATAAAGTTCT 311
||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 255 GAAGCATGGTGAATATATGTTGAGAGAGCTTGTTAAGAGATGGGCCAACCAGAAAATTCT 314
Query 312 GGTTAGATGGTTATCCCGCTTCTTCGACTATCTTGACCGTTACTTTGT--TCCTCGGAGA 369
|||||||||||||||| ||||||||| ||||||||||||| ||| | || |||| |
Sbjct 315 TGTTAGATGGTTATCCCACTTCTTCGAATATCTTGACCGTT--TTTATACTCGTCGGGGG 372
Query 370 AATCTTCTAACACTGAATAG-TGTTGGCTTGACATCCTTTCGCGACCTGGTTTATCAAGA 428
|| || |||||||| | | ||||||||| | |||||| ||||||||||||||||||||
Sbjct 373 TCTCATCCAACACTGAGT-GCTGTTGGCTTCATATCCTTCCGCGACCTGGTTTATCAAGA 431
Query 429 GATACAGTCCAATGCCAAAGACGCTGTACTAGAACTTATTCATAAAGAACGTGAGGGTGA 488
| |||||||||| ||||||||||||||||||| |||||||||||||||||| ||||| ||
Sbjct 432 GTTACAGTCCAAGGCCAAAGACGCTGTACTAGCACTTATTCATAAAGAACGCGAGGGCGA 491
Query 489 ACAGATTGATAGATCACTATTGAAAAACGTAATAGATGTCTATTGTGGGAATGGAATGGG 548
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 492 ACAGATTGATAGAGCACTATTGAAAAACGTAATAGATGTCTATTGTGGGAATGGGATGGG 551
Query 549 AGAGATGGTAAAATACGAAGAGGATTTTGAAAGCTTCTTGCTTCAAGATTCTGCATCTTA 608
|||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 552 AGAGCTGGTTAAATACGAAGAGGATTTTGAAAGCTTCTTGCTTGAAGATTCTGCATCTTA 611
Query 609 CTATTCTCGCAAGGCCTCAAAGTGGAGCCAGGAGGATTCTTGTCCTGATTACATGCGAAA 668
||| |||||||| ||||||| ||||| ||||||| |||||||||||||||||||| |||
Sbjct 612 CTACTCTCGCAACGCCTCAAGGTGGAACCAGGAGAATTCTTGTCCTGATTACATGATAAA 671
Query 669 GGCTGAGGAGTGTCTAAAACTGGAGAAGGAGAGAGTCACTAACTACCTTCATTCAACCAC 728
||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 672 GGCTGAGGAGTCTCTAAGACTGGAGAAGGAGAGAGTCACCAACTACCTTCATTCAACCAC 731
Query 729 TGAGCCGAAATTACTTGGGAAAGTACAAAATGAGTTGTTGGTAGTGGTTGCAAAACAGCT 788
|||||||||| || ||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 732 TGAGCCGAAACTAGTTGCGAAAGTACAAAATGAATTGTTGGTAGTGGTTGCAAAACAACT 791
Query 789 TATAGAAAATGAGCAGTCAGGGTGCCGTGCATTGCTAAGAGATGACAAGATGGATGATCT 848
||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||||||||
Sbjct 792 TATAGAAAATGAGCACTCAGGATGCCGTGCATTGTTAAGAGACGACAAGATGGATGATCT 851
Query 849 CTCCAGGATGTACAAGCTTTATCAACCAAT-CCTTCAAGGGTTGGATCCTGTTGCAGACT 907
| |||||||||||| ||||||||| ||||| || |||||| ||||||||||||||||||
Sbjct 852 CGCCAGGATGTACAGGCTTTATCATCCAATACC-GCAAGGGCTGGATCCTGTTGCAGACT 910
Query 908 TATTCAAGCAGCATGTTACTGCAGAGGGAAATGCCCTTATCAAACAAGCCGCCGACGCAG 967
|||||||||| ||| |||||| |||||||| |||||||||||||||||| |||| ||||
Sbjct 911 TATTCAAGCAACATATTACTGTAGAGGGAAGTGCCCTTATCAAACAAGCTACCGAGGCAG 970
Query 968 CTACTAATCAGGATGCAAGTGCTGGTGG-C-----GTGCAGGACCAGGTGCTTGTCAGA- 1020
||||| || ||| ||||||| || |||| | |||||||||||||||||| |||||
Sbjct 971 CTACTGATAAGGCTGCAAGTACTAGTGGACTGAAGGTGCAGGACCAGGTGCTTATCAGAC 1030
Query 1021 AAAGAGATTGAGCTACACGATAAATACATGGTCTATGTCGATGAGTGTTTTCAGAAACAC 1080
|| | ||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1031 AATTA-ATTGACCTACACGATAAATTCATGGTCTACGTCGATGAGTGTTTTCAGAAACAC 1089
Query 1081 AGCCTCTTCCATAAGGCATTAAAAGAGGCATTTGAAGTCTTCTGTAACAAAACAGTGGCT 1140
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 1090 AGCCTCTTCCATAAGGCATTGAAGGAGGCATTTGAAGTCTTCTGTAACAAGACAGTGGCT 1149
Query 1141 GGAGTGTCTAGTGCAGAAATACTTGCAACCTATTGTGATAATATCCTCAAGACAAAAGGT 1200
|||||||| ||||||||||| |||||||| ||||| ||||||||||||||||| |||
Sbjct 1150 GGAGTGTCCAGTGCAGAAATTCTTGCAACGTATTGCGATAATATCCTCAAGACGGGAGGG 1209
Query 1201 GGAAGTGAGAAGCTTAGTGAA-GAAGTTAC-TGAAATTACGCTTGAGAAAGTGGTTAAGT 1258
|||| |||||||||| | || |||| | | |||| ||||||||||||||||||||||||
Sbjct 1210 GGAATTGAGAAGCTT-GAAAATGAAGAT-CTTGAACTTACGCTTGAGAAAGTGGTTAAGT 1267
Query 1259 TGCTTGTTTATATAAGCGACAAGGATCTTTTCGCCGAGTTTTACAGGAAGAAACAAGCCC 1318
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1268 TGCTTGTTTATATAAGTGACAAGGATCTTTTCGCCGAGTTTTTCAGGAAGAAACAAGCCC 1327
Query 1319 GTCGGCTCTTATTTGATCGCAGCGGTAATGACGAGCACGAAAGAAGTATACTTACAAAGT 1378
|||||||||| |||||||||| |||||||||| | |||||||||||| ||||||||||||
Sbjct 1328 GTCGGCTCTTGTTTGATCGCAACGGTAATGACTACCACGAAAGAAGTTTACTTACAAAGT 1387
Query 1379 TAAAAGAACTACTCGGGGGGCAGTTTACTTCTAAGATGGAGGGCATGGTGACGGATATAA 1438
| |||||||||||||| | |||||||||||||||||||||||||||| |||||||||| |
Sbjct 1388 TTAAAGAACTACTCGGTGCGCAGTTTACTTCTAAGATGGAGGGCATGCTGACGGATATGA 1447
Query 1439 CATTGGCAAAAGAGCAGCAAACCAACTTCGCT-G-ATTATCTATCAGCTAGCCTGACCAC 1496
||||||||||||| || ||||||||||||| | | ||| | |||||| || | |||||
Sbjct 1448 CATTGGCAAAAGAACACCAAACCAACTTCG-TGGAATT-TTTATCAGTTAACAAGACCAA 1505
Query 1497 AAAGCTGGGGATTGATTTGACTGTCACTGTTCTTACTACTGGTTTCTGGCCAAGTTACAA 1556
|||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1506 AAAGCTGGGGATGGATTTCACTGTCACTGTACTTACTACTGGTTTTTGGCCAAGTTACAA 1565
Query 1557 AACATCTGACCTCAATCTACCCATTGAAATGGTCAACTGTGTTGAAGCTTTTAAAACCTT 1616
|||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1566 AACAACCGACCTCAATCTACCCATTGAAATGGTCAACTGTGTTGAAGCTTTTAAGGCCTA 1625
Query 1617 TTATGGAACAATAACCAA-ACACAGGAGACTTTCGTGGATTTATTCTCTGGGAACTTGTC 1675
||||||||||| |||||| | |||||||||||| |||||||||||| | ||||||||||
Sbjct 1626 TTATGGAACAAAAACCAATTC-CAGGAGACTTTCATGGATTTATTCTTTAGGAACTTGTC 1684
Query 1676 ACATT-TCTGGAAAATTCGATAAAAAATC-ATTGGAGTTAGTCGTTTCCACCTACCAGGC 1733
| || |||||||||||||||||||| | ||| ||| |||| ||| |||||||||||||
Sbjct 1685 A-GTTAGCTGGAAAATTCGATAAAAAAACAATT-GAGATAGTAGTTACCACCTACCAGGC 1742
Query 1734 TGCGGTGCTTTTGCTCTTCAACAACGCAGAGAGATTGAGCTACACTGAGATGTTGGAGCA 1793
||| |||||||| |||||||||||| |||||||||| |||||||||||||| ||||||||
Sbjct 1743 TGCTGTGCTTTTACTCTTCAACAACACAGAGAGATTAAGCTACACTGAGATCTTGGAGCA 1802
Query 1794 GCTAAACCTTAGCCATGAAGATCTTGTCAGGCTGCTTCATTCACTGTCATGCGGGAAGTA 1853
||||||||| ||||||||||||||| |||||||||||||||||| |||||| |||||
Sbjct 1803 GCTAAACCTCGGCCATGAAGATCTTGCCAGGCTGCTTCATTCACTATCATGCTTAAAGTA 1862
Query 1854 CAAGATTCTTATAAAGGAACCAATGTCGAGAACCATCTCTAAAACGGATACGTTTGAATT 1913
|||||||||||||||||||||||||||||||| |||||| || || ||||| ||||||||
Sbjct 1863 CAAGATTCTTATAAAGGAACCAATGTCGAGAAACATCTCCAACACCGATACCTTTGAATT 1922
Query 1914 CAACTCCAAGTTCACCGATAAGATGAGGAGAATTAGGGTGCCTCTGCCTCCAATGGATGA 1973
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1923 CAACTCCAAGTTCACCGATAAGATGAGGAGAATTAGGGTGCCTCTGCCTCCGATGGATGA 1982
Query 1974 GAGGAAGAAAGTTGTTGAAGATGTTGATAAAGATAGACGCTATGCAATAGATGCAGCTCT 2033
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1983 GAGGAAGAAAATTGTTGAAGATGTTGATAAAGATAGACGCTATGCAATTGATGCAGCTCT 2042
Query 2034 TGTTCGGATCATGAAGAGCAGAAAAGTGTTGGGGCATCAACAGTTAGTCTCTGAATGTGT 2093
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 2043 TGTTCGGATCATGAAGAGTAGAAAAGTGTTGGGGCATCAACAGTTGGTCTCTGAATGTGT 2102
Query 2094 TGAGCATCTTAGCAAAATGTTCAAGCCTGATATAAAGATGATAAAGAAACGGATTGAGGA 2153
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2103 TGAGCATCTCAGCAAAATGTTCAAGCCTGATATAAAGATGATAAAGAAACGGATTGAGGA 2162
Query 2154 CTTGATCAGCAGAGATTATTTGGAGAGGGATAGCGAAAATCCCAACACTTTCAAGTATGT 2213
|||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |
Sbjct 2163 CTTGATCAGCAGAGATTACTTGGAGAGGGATACCGACAATCCCAACACTTTCAAGTATTT 2222
Query 2214 GGCTTAG 2220
|||||||
Sbjct 2223 GGCTTAG 2229
> AT1G43140.1 | Symbols: | Cullin family protein | chr1:16232785-16236109
FORWARD LENGTH=2166
Length=2166
Score = 1735 bits (939), Expect = 0.0
Identities = 1218/1350 (90%), Gaps = 29/1350 (2%)
Strand=Plus/Plus
Query 6 GAAGG-GTATAATTGTGTTGGAGGAAGGATGGCCCT-TCATGGAGGCTGGTGTTACAAAG 63
||||| || |||| | ||||||||||||||| || ||||| || |||||||| |||||
Sbjct 33 GAAGGAGT-TAATCCTATTGGAGGAAGGATGG-TCTGTCATGAAGACTGGTGTTGCAAAG 90
Query 64 CTACATAGGATTCTGGAAGAATTGCCTGAGCCAGCATTTGA-GTCGGTTCAATATATGAA 122
||||| |||||||| ||||| ||| |||||||| | ||||| ||| ||||||||| ||
Sbjct 91 CTACAAAGGATTCTAGAAGATTTGTCTGAGCCACCGTTTGACCCCGG-TCAATATATCAA 149
Query 123 TCTGTACACGACTATCTACAATATGTGTGTCCAGA-AACCTCCTCATGATTTCTCAC-AG 180
||||||||||| ||||||| |||||||| |||| | |||||||| |||||| ||||| ||
Sbjct 150 TCTGTACACGATTATCTACGATATGTGTCTCCA-ACAACCTCCTAATGATTACTCACAAG 208
Query 181 CAGCTTTATGATAAGTATCGTGGAGTAATTGATGATTACAATAAACAAACAGTGTTGCCG 240
|||||||| |||||||||||||||| ||||| ||||||||||| |||| || ||||||
Sbjct 209 -AGCTTTATAATAAGTATCGTGGAGTGGTTGATCATTACAATAAAGAAACTGTTTTGCCG 267
Query 241 GCTATAAGGAAGAAGCATGGTGAATATATGCTGAGAGAGCTTGTTAAGAGATGGGCTAAC 300
|||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 TCTATGAGGGAGAGGCATGGTGAATATATGCTGAGAGAGCTTGTTAAGAGATGGGCTAAC 327
Query 301 CATAAAGTTCTGGTTAGATGGTTATCCCGCTTCTTCGACTATCTTGACCGTTACTTTGTT 360
|||||| ||||||||||||||||||| ||||||| | ||||||||||||| || ||||
Sbjct 328 CATAAAATTCTGGTTAGATGGTTATCTCGCTTCTGCTTTTATCTTGACCGTTTCTATGTT 387
Query 361 CCTCGGAGAAATCTTCTAACACTGAAT-AGTGTTGGCTTGACATCCTTTCGCGACCTGGT 419
|||||||| ||||| |||||||||| | ||||||||| |||||||||| |||||| ||
Sbjct 388 GCTCGGAGAGGTCTTCCAACACTGAATGA-TGTTGGCTTCACATCCTTTCACGACCTAGT 446
Query 420 TTATCAAGAGATACAGTCCAATGCCAAAGACGCTG-TACTAGAACTTATTCATAAAGAAC 478
||||||||||||||||||| | |||||||| | || |||||| |||||||||||||||||
Sbjct 447 TTATCAAGAGATACAGTCCGAGGCCAAAGATG-TGCTACTAGCACTTATTCATAAAGAAC 505
Query 479 GTGAGGGTGAACAGATTGATAGATCACTATTGAAAAACGTAATAGATGTCTATTGTGGGA 538
|||| || ||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 506 GTGAAGGCGAACAGATTGATAGAACACTAGTGAAAAACGTAATAGATGTCTATTGTGGGA 565
Query 539 ATGGAATGGGAGAGATGGTAAAATACGAAGAGGATTTTGAAAGCTTCTTGCTTCAAGATT 598
|||| | ||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 566 ATGGGGTTGGACAGATGGTAATATACGAAGAGGATTTTGAAAGCTTCTTGCTTCAAGATA 625
Query 599 CTGCATCTTACTATTCTCGCAAGGCCTCAAAGTGGAGCCAGGAGGATTCTTGTCCTGATT 658
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 626 CTGCATCTTACTATTCTCGCAAGGCCTCAAGGTGGAGCCAGGAGGATTCTTGTCCTGATT 685
Query 659 ACATGCGAAAGGCTGAGGAGTGTCTAAAACTGGAGAAGGAGAGAGTCACTAACTACCTTC 718
|||||| ||||||||| |||||||| ||| |||||||||| |||||||||||||||||||
Sbjct 686 ACATGCTAAAGGCTGAAGAGTGTCTTAAATTGGAGAAGGAAAGAGTCACTAACTACCTTC 745
Query 719 ATTCAACCACTGAGCCGAAATTACTTGGGAAAGTACAAAATGAGTTGTTGGTAGTGGTTG 778
|||| ||||||||||| ||| || ||| ||||||||||||||| ||||||||||||||||
Sbjct 746 ATTCTACCACTGAGCCCAAACTAGTTGAGAAAGTACAAAATGAATTGTTGGTAGTGGTTG 805
Query 779 CAAAACAGCTTATAGAAAATGAGCAGTCAGGGTGCCGTGCATTGCTAAGAGATGACAAGA 838
||||||||||||||||||||||||| || ||||||| ||||||| |||||||||||||||
Sbjct 806 CAAAACAGCTTATAGAAAATGAGCACTCTGGGTGCCTTGCATTGTTAAGAGATGACAAGA 865
Query 839 TGGATGATCTCTCCAGGATGTACAAGCTTTATCAACCAATCCTTCAAGGGTTGGATCCTG 898
||| ||||||||| |||||||||| |||||||| | ||||| ||||||||||| |||
Sbjct 866 TGGGTGATCTCTCGAGGATGTACAGGCTTTATCGTCTAATCCCGCAAGGGTTGGAACCTA 925
Query 899 TTGCAGACTTATTCAAGCAGCATGTTACTGCAGAGGGAAATGCCCTTATCAAACAAGCCG 958
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 926 TTGCAGACTTATTCAAGCAGCATGTTACTGCAGAAGGAAATGCCCTTATCAAACAAGCCG 985
Query 959 CCGACGCAGCTACTAATCAGGATGCAAGTGCTGGTGGCGTGCAGGACCAGGTGCTTGTCA 1018
||||||||||||||||||| |||||||||||| || | ||| |||||||||
Sbjct 986 CCGACGCAGCTACTAATCAAGATGCAAGTGCTAGT--C----AGG------TGCTTGTCA 1033
Query 1019 GAAAAGAGATTGAGCTACACGATAAATACATGGTCTATGTCGATGAGTGTTTTCAGAAAC 1078
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1034 GAAAAGAGATTGAACTACACGATAAATACATGGTCTATGTAGATGAGTGTTTTCAGAAAC 1093
Query 1079 ACAGCCTCTTCCATAAGGC-ATTAAAAGAGGCATTTGAAGTCTTCTGTAACAAAACAGTG 1137
||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||
Sbjct 1094 ACAGCCTCTTCCATAAG-CTATTAAAAGAGGCGTTTGAAGTCTTCTGTAACAAAACAGTG 1152
Query 1138 GCTGGAGTGTCTAGTGCAGAAATACTTGCAACCTATTGTGATAATATCCTCAAGACAAAA 1197
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1153 GCTGGAGCGTCCAGTGCAGAAATACTTGCAACCTATTGTGATAATATCCTCAAGACCAGA 1212
Query 1198 GGTGGAAGTGAGAAGCTTAGTGAAGAAGTTACTGAAATTACGCTTGAGAAAGTGGTTAAG 1257
||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||
Sbjct 1213 GGTGGAAGTGAGAAGCTTAGTGATGAAGCTACTGAAATTACGCTTGAGAAAGTAGTTAAT 1272
Query 1258 TTGCTTGTTTATATAAGCGACAAGGATCTTTTCGCCGAGTTTTACAGGAAGAAACAAGCC 1317
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 TTGCTTGTTTATATAAGTGACAAGGATCTTTTCGCCGAGTTTTACAGGAAGAAACAAGCT 1332
Query 1318 CGTCGGCTCTTATTTGATCGCAGCGGTAAT 1347
|||||||||||||||||||||||||| |||
Sbjct 1333 CGTCGGCTCTTATTTGATCGCAGCGG-AAT 1361
Score = 1136 bits (615), Expect = 0.0
Identities = 742/802 (93%), Gaps = 14/802 (2%)
Strand=Plus/Plus
Query 1426 GTGACGGATATAACATTGGCAAAAGAGCAGCAAACCAACTTCGCT-GATTATCTATCAGC 1484
|||||||||||||||||||||| ||| | ||||||||||||| | |||||| |||||||
Sbjct 1372 GTGACGGATATAACATTGGCAAGAGAACTCCAAACCAACTTCG-TGGATTATTTATCAGC 1430
Query 1485 TAGCCTGACCACAAAGCTGGGGATTGATTTGACTGTCACTGTTCTTACTACTGGTTTCTG 1544
| | |||| |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1431 AAACATGACAACAAAGCTGGGGATTGATTTTACTGTCACTGTTCTTACTACTGGTTTTTG 1490
Query 1545 GCCAAGTTACAAAACATCTGACCTCAATCTACCCATTGAAATGGTCAACTGTGTTGAAGC 1604
|||||||||||||||| | ||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1491 GCCAAGTTACAAAACAACAGACCTTAATCTACCCACTGAAATGGTCAACTGTGTTGAAGC 1550
Query 1605 TTTTAAAACCTTTTATGGAACAATAACCAA-ACACAGGAGACTTTCGTGGATTTATTCTC 1663
|||||| |||||||||||||| |||||| | |||||||||||| |||||||||||||
Sbjct 1551 TTTTAAGGTCTTTTATGGAACAAAAACCAATTC-CAGGAGACTTTCATGGATTTATTCTC 1609
Query 1664 TGGGAACTTGTCACATTTC-TGGAAAATTCGATAAAAAATCATTGGAGTTAGTCGTTTCC 1722
| ||||||||||||| ||| |||||||||||| |||||| || |||||||||||||||||
Sbjct 1610 TTGGAACTTGTCACA-TTCTTGGAAAATTCGAGAAAAAAACAATGGAGTTAGTCGTTTCC 1668
Query 1723 ACCTACCAGGCTGCGGTGCTTTTGCTCTTCAACAACGCAGAGAGATTGAGCTACACTGAG 1782
|| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1669 ACGTACCAGGCTGCTGTGCTTTTGCTCTTCAACAACGCAGAGAGATTAAGCTACACCGAG 1728
Query 1783 ATGTT-GGAGCAGCTAAACCTTAGCCATGAAGATCTTGTCAGGCTGCTTCATTCACTGTC 1841
|| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1729 AT-TTCAGAGCAGCTAAACCTCAGCCATGAAGATCTTGTCAGGCTGCTTCATTCACTGTC 1787
Query 1842 ATGCGGGAAGTACAAGATTCTTATAAAGGAACCAATGTCGAGAACCATCTCTAAAACGGA 1901
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1788 ATGCTTAAAGTACAAGATTCTTATAAAGGAACCAATGTCGAGAACCATCTCGAAAACCGA 1847
Query 1902 TACGTTT-GAATTCAACTCCAAGTTCACCGATAAGATGAGG-AGAATTAGGGTGCCTCTG 1959
||| ||| |||||||||||||||||||| ||||||||| || || |||||||||||| ||
Sbjct 1848 TAC-TTTCGAATTCAACTCCAAGTTCACAGATAAGATGCGGAAG-ATTAGGGTGCCTTTG 1905
Query 1960 CCTCCAATGGATGAGAGGAAGAAAGTTGTTGAAGATGTTGATAAAGATAGACGCTATGCA 2019
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1906 CCTCCAATGGATGAGAGGAAGAAAGTAGTTGAAGATGTTGATAAAGATAGACGCTATGCA 1965
Query 2020 ATAGATGCAGCTCTTGTTCGGATCATGAAGAGCAGAAAAGTGTTGGGGCATCAACAGTTA 2079
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1966 ATAGATGCAGCTCTTGTTCGGATCATGAAGAGTAGAAAAGTGTTGGCGCATCAACAGTTA 2025
Query 2080 GTCTCTGAATGTGTTGAGCATCTTAGCAAAATGTTCAAGCCTGATATAAAGATGATAAAG 2139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2026 GTCTCTGAATGTGTTGAGCATCTTAGCAAAATGTTCAAGCCTGATATAAAGATGATAAAG 2085
Query 2140 AAACGGATTGAGGACTTGATCAGCAGAGATTATTTGGAGAGGGATAGC-GAAAATCCCAA 2198
|||||||||||||||||||||| |||||||||||||||||||||| | |||||| ||||
Sbjct 2086 AAACGGATTGAGGACTTGATCAATAGAGATTATTTGGAGAGGGATA-CAGAAAATGCCAA 2144
Query 2199 CACTTTCAAGTATGTGGCTTAG 2220
||||||||||||||| ||||||
Sbjct 2145 CACTTTCAAGTATGTAGCTTAG 2166
> AT4G02570.1 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 | chr4:1128622-1133696
FORWARD LENGTH=2747
Length=2747
Score = 1598 bits (865), Expect = 0.0
Identities = 1802/2246 (80%), Gaps = 97/2246 (4%)
Strand=Plus/Plus
Query 22 TTGGAGGAAGGATGGCCCT-TCATGGAGGCTGGTGTTACAAAGCTACATA-GGATTCTGG 79
|||||| |||||||| || | ||| || |||| |||| ||||| | | |||||||||
Sbjct 291 TTGGAGCAAGGATGGGACTAT-ATGCAGACTGGAATTACTAAGCT-GAAACGGATTCTGG 348
Query 80 AAGAATTGCCTGAGCCAGCATTTGAGTCGGTTCAATATATGAAT-CTGTACACGACTATC 138
||| |||| ||||||||||||||| || | ||||||||| || || || |||||||||
Sbjct 349 AAGGATTGAATGAGCCAGCATTTGACTCTGAGCAATATATG-ATGCTTTATACGACTATC 407
Query 139 TACAATATGTGTGTCCAGAAACCTCCTCATGATTTCTCACAGCAGCTTTATGATAAGTAT 198
||||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 408 TACAACATGTGCACCCAGAAACCTCCTCATGATTACTCACAGCAGCTTTATGACAAGTAT 467
Query 199 CGTGG-AGTAATTGATGATTACAATAAAC-AAACAGTGTTGCCGGC-TATAAGGAAGAAG 255
|| || || | |||| || || || ||| |||||| ||||| || | | ||| |||||
Sbjct 468 CG-GGAAGCATTTGAGGAATA-TATTAACTCAACAGTTTTGCCTGCGT-TGAGGGAGAAG 524
Query 256 CATGGTGAATATATGCTGAGAGAGCT-TGTTAAGAGATGGGCTAACCATAAAGTTCTGGT 314
|||| ||| | ||||||| | ||||| | |||| |||||| | ||||||||||| ||||
Sbjct 525 CATGATGAGTTTATGCTGCGGGAGCTAT-TTAAAAGATGGTCAAACCATAAAGTAATGGT 583
Query 315 TAGATGGTTATCCCGCTTCTTCGACTATCTTGACCGTTACTTTGTTCCTCGGAGA-AATC 373
|||||| |||||||||||||| |||| |||||||||||||| || |||||||| | |
Sbjct 584 CAGATGGCTATCCCGCTTCTTCTACTACCTTGACCGTTACTTCATTGCTCGGAGATCA-C 642
Query 374 TTCTAACACTGAATAG-TGTTGGCTTGACATCCTTTCGCGACCTGGTTTATCAA-GAGAT 431
||| | |||||||| | |||||| |||||| ||| || |||||||||||| || ||| |
Sbjct 643 TTCCACCACTGAAT-GAAGTTGGCCTGACATGCTTCCGTGACCTGGTTTAT-AATGAGCT 700
Query 432 ACAGTCCAATGCCAAAGACGCTGTACTAGAACTTATTCATAAAGAACGTGAGGGTGAACA 491
||| || || | |||| | |||||| ||| ||| || |||||||||| ||||| || ||
Sbjct 701 ACATTCTAAGGTCAAACAAGCTGTAATAGCTCTTGTTGATAAAGAACGGGAGGGCGAGCA 760
Query 492 GATTGATAGATCACTATTGAAAAACGTAATAGATGTCTATTGT-GGGAATGGAATGGGAG 550
||||||||| | || ||||||||||| ||||| |||| ||| | || ||||||||| |
Sbjct 761 GATTGATAGGGCCCTGCTGAAAAACGTATTAGATATCTA-TGTAGAGATTGGAATGGG-G 818
Query 551 -AGATGGTA-AAATACGAAGAGGATTTTGAAAGCTTCTTGCTTCAAGATTCTGCATCTTA 608
|||||| | | || ||||| ||||||||||||||| ||||||||||| || | || ||
Sbjct 819 CAGATGG-AGAGGTATGAAGAAGATTTTGAAAGCTTCATGCTTCAAGATACTTCTTCGTA 877
Query 609 CTATTCTCGCAAGGCCTCAAAG-TGGAGCCAGGAGGATTCTTGTCCTGATTACATG-CGA 666
|||||||||||||| || ||| |||| ||||| |||||||| |||||||||||| |
Sbjct 878 TTATTCTCGCAAGGCATC-AAGCTGGATTCAGGAAGATTCTTGCCCTGATTACATGTTG- 935
Query 667 AAGGCTGAGGAGTGTCTAAA-ACTGGAGAAGGAGAGAGTCACTAACTACCTTCATTCAAC 725
||| |||| || |||||||| | ||||| ||||||||| || ||||||| || ||||
Sbjct 936 AAGTCTGAAGAATGTCTAAAGA-AGGAGAGGGAGAGAGTGGCTCACTACCTACACTCAAG 994
Query 726 CACTGAGCCGAAA-TTACTTGGGAAAGTACAAAATGAGTTGTTGGTAGTGGTTGCAAAAC 784
|| |||||| ||| | ||| |||||||||| |||| ||| |||| ||| |||||| |
Sbjct 995 CAGTGAGCC-AAAGCTGGTTGAGAAAGTACAACATGAATTGCTGGTTGTGTTTGCAAGTC 1053
Query 785 AGCTTATAGAAAATGAGCAGTCAGGGTGCCGTGCATTGCTAAGAGATGACAAGATGGATG 844
||||| ||||||| || || ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1054 AGCTTCTAGAAAAAGAACACTCAGGGTGCCGTGCATTGCTAAGAGATGACAAGGTGGATG 1113
Query 845 ATCTCTCCAGGATGTACAAGCTTTATCA-ACCAATCCTT-CAAGGGTTGGATCCTGTTGC 902
|||||||||||||||||| |||||| || | ||| || | ||| ||||| ||||||||
Sbjct 1114 ATCTCTCCAGGATGTACAGGCTTTACCATA-AAAT-TTTGCGAGGCTTGGAACCTGTTGC 1171
Query 903 AGACTTATTCAAGCAGCATGTTACTGCAGAGGGAAATGCCCTTATCAAACAAGCCGCCGA 962
| || | || ||||||||||| || |||||||| || || ||| || |||| |||| ||
Sbjct 1172 AAACATCTTTAAGCAGCATGTCACAGCAGAGGGTAACGCTCTTGTCCAACAGGCCGAAGA 1231
Query 963 CGCAGCTACTAATCAGGATGCAAGTGCTGGTGGCGTGCAGGACCAGGTGCTTGTCAGAAA 1022
| | ||||||||||||| ||||| | ||| | |||| ||||| ||||| ||| |||||||
Sbjct 1232 CACGGCTACTAATCAGGTTGCAAATACTGCTAGCGTCCAGGAACAGGTTCTTATCAGAAA 1291
Query 1023 AGAGATTGAGCTACACGATAAATACATGGTCTATGTCGA-TGAGTGTTTTCAGAAACACA 1081
|| |||||| || || |||||||||||||| |||||| | |||||||| ||||| ||||
Sbjct 1292 AGTGATTGAACTTCATGATAAATACATGGTATATGTC-ACCGAGTGTTTCCAGAACCACA 1350
Query 1082 GCCTCTTCCATAAGGCATTAAAAGAGGCATTTGAAG-TCTTCTGTAACAAAACAGTGGCT 1140
||||||||||||||| || ||||||||||||| || | || ||||||||||| || |||
Sbjct 1351 CCCTCTTCCATAAGGCTTTGAAAGAGGCATTTG-AGATTTTTTGTAACAAAACGGTTGCT 1409
Query 1141 GG-AGTGTCTAGTGCAGAAATACTTGCAACCTATTGTGATAATATCCTCAAGACAAAAGG 1199
|| ||| || ||||||||| |||||||||| | ||| || ||||| ||| | | ||| ||
Sbjct 1410 GGAAGT-TCAAGTGCAGAACTACTTGCAACATTTTGCGACAATATTCTC-A-A-AAAGGG 1465
Query 1200 TGGAAGTGAGAAGCTTAGTGAAGAAGTTACT-GAA-ATTACGCTTGAGAAAGTGGTTAAG 1257
|||||||| ||||| ||||| |||| || | ||| | |||||||||||| || || ||
Sbjct 1466 GGGAAGTGAAAAGCTGAGTGATGAAGCTA-TCGAAGA-TACGCTTGAGAAGGTTGTCAAA 1523
Query 1258 TTGCTTGTTTATATAAGCGACAAGGATCTTTTCGCCGAGTTTTACAGGAAGAAACAAGCC 1317
||||||| || ||||| ||||||||||||||||| ||||| ||||||||||| | |||
Sbjct 1524 TTGCTTGCATACATAAGTGACAAGGATCTTTTCGCTGAGTTCTACAGGAAGAAGCTGGCC 1583
Query 1318 CGTCGGCTCTTATTTGATCGCAGCGGTAATGACGAGCACGAAAGAAGTATACTTACAAAG 1377
||| ||||||||||||||||||| | |||||| || || || |||||||| || ||||||
Sbjct 1584 CGTAGGCTCTTATTTGATCGCAGTGCTAATGATGATCATGAGAGAAGTATCCTGACAAAG 1643
Query 1378 TTAAAAG-AACTACTCG-GG-GGGCAGTTTACTTCTAAGATGGAGGGCATGGTGACGGAT 1434
| ||| ||| | | | || || ||||||||||||||||||||||||||||||||||||
Sbjct 1644 CT-CAAGCAAC-AAT-GTGGTGGACAGTTTACTTCTAAGATGGAGGGCATGGTGACGGAT 1700
Query 1435 ATAACATTGGCAAAAGAGCAGCAAACCAACTTCGCTGATTATCTAT-CAGCTAGCC-TGA 1492
| ||| |||||| ||| | |||| || |||| ||||||||| ||| || || ||
Sbjct 1701 TTGACACTGGCAAGAGAAAACCAAAACAGTTTCGAGGATTATCTAGGCAG-TAACCCTG- 1758
Query 1493 CCACAAAGCTGGGGATTGATTTGACTGTCACTGTTCTTACTACTGGTTTCTGGCCAAGTT 1552
| |||| | |||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 1759 CTGCAAACCCAGGGATTGACTTGACCGTCACTGTTCTTACCACTGGTTTCTGGCCAAGTT 1818
Query 1553 ACAAAACATCTGACCTCAATCTACCCATTGAAATGGTCAACTGTGTTGAAGCTTTTAAAA 1612
||||| ||| |||| | |||||||||| ||||||| |||| |||||||||| | || |||
Sbjct 1819 ACAAATCATTTGACATAAATCTACCCAGTGAAATGATCAAGTGTGTTGAAG-TCTTCAAA 1877
Query 1613 CC-TTTTATGGAAC-AATAACCAAACACAGGA-GACTTTCGTGGATTTATTCTCTGGGAA 1669
||||||| ||| || ||| |||||||||| | ||| ||||||| ||||| |||||||
Sbjct 1878 GGGTTTTATGAAACGAA-AACGAAACACAGGAAG-CTTACGTGGATCTATTCACTGGGAA 1935
Query 1670 CTTGTCACATTT-CTGGAAAATTCGATAAAAAATC-ATTGGAGTTAGTCGTTTCCACCTA 1727
|||||||||| | |||| || ||| |||| | || | ||||| | || || || ||
Sbjct 1936 CTTGTCACATAAACGGGAAGTTT-GATCAAAAGGCCATCG-AGTTAATAGTGTCTACTTA 1993
Query 1728 CCAGGCTGCGGTGCTTTTGCTCTTCAACA-ACGCAGAGA-GATTGAGCTACACTGAGATG 1785
||||||||| |||||| | ||||| |||| | | || | | || || |||||||||||
Sbjct 1994 CCAGGCTGCTGTGCTTCTACTCTTTAACACAA-CTGACAAG-TTAAGTTACACTGAGATC 2051
Query 1786 TTGGAGCAGCTAAACCTTAGCCATGAAGATCTTGTCAGGCTGCTTCATTCACT-GTCATG 1844
|||| || || ||||| |||||||||||||| || ||| |||||||||| || ||||||
Sbjct 2052 TTGGCTCAACTGAACCTAAGCCATGAAGATCTAGTTAGGTTGCTTCATTC-CTTGTCATG 2110
Query 1845 CGGGAAGTACAAGATTCTTATAAAGGAACCAATGTCGA-GAACCATCTCTAA-AACGGAT 1902
| ||||||||||| || | ||||| |||| | | || | |||| | || | ||
Sbjct 2111 TGCTAAGTACAAGATACTCCTTAAGGAGCCAAACACCAAGA-CTGTCTCCCAGAATG-AT 2168
Query 1903 ACGTTTGAATTCAACTCCAAGTTCACCGATAAGA-TGAGGAGAATTAGGGTGCCTCTGCC 1961
| ||||| ||||||||||| |||||||||| || || | ||||| | | | ||||| ||
Sbjct 2169 GCCTTTGAGTTCAACTCCAAATTCACCGATA-GAATGCGCAGAATCAAGATCCCTCTTCC 2227
Query 1962 TCCAATGGATGAGAGGAAGAAAGTTGTTGAAGATGTTGATAAAGATAGACGCTATGCAAT 2021
||| | ||||| ||||||||||| ||||||||||| |||||||| ||| | ||||||||
Sbjct 2228 CCCAGTTGATGAAAGGAAGAAAGTCGTTGAAGATGTCGATAAAGACAGAAGATATGCAAT 2287
Query 2022 AGATGCAGCTC-TTGTTC-GGATCATGAAGAGCAGAAAAGTGTTGGGGCATCAACAG-TT 2078
||||| || | |||| | |||||||||||||||| ||||| ||||| |||||||| ||
Sbjct 2288 TGATGCTGC-CATTGT-CAGGATCATGAAGAGCAGGAAAGTATTGGGACATCAACAACTT 2345
Query 2079 AGTCTCTGAATGTGTTGAGCATCTTAGCAAAATGTTCAAGCCTGATAT-AAAGATGATAA 2137
|| ||||| ||||||||||| |||||| |||||||||||||||||| |||| ||| |
Sbjct 2346 -GTTTCTGAGTGTGTTGAGCAACTTAGCCGAATGTTCAAGCCTGATATCAAAGC-GATCA 2403
Query 2138 AGAAACGGATTGAGGACTTGATCAGCAGAGATTATTTGGAGAGGGATA-GCGAAAATCCC 2196
|||| || || ||||| || || | ||||||||||||||||||||| | | || |||||
Sbjct 2404 AGAAGCGTATGGAGGATTTAATAACCAGAGATTATTTGGAGAGGGACAAG-GAGAATCCT 2462
Query 2197 AACAC-TTTCAAGTA-TGTGGCTTAG 2220
|||| ||| | ||| | ||||||||
Sbjct 2463 AACATGTTT-AGGTACT-TGGCTTAG 2486
> AT1G59800.1 | Symbols: | Cullin family protein | chr1:22004964-22006172
FORWARD LENGTH=768
Length=768
Score = 357 bits (193), Expect = 3e-97
Identities = 459/583 (79%), Gaps = 36/583 (6%)
Strand=Plus/Plus
Query 181 CAGCTTTATGATAAGTATCGTGGAGTAATTGATG-ATTA--CAATAAACAAACAGTGTTG 237
|||||||||||||||||||||| | ||||||| | |||| |||| ||||| ||||||
Sbjct 172 CAGCTTTATGATAAGTATCGTGAATTAATTGA-GAATTATGCAAT--CCAAACGGTGTTG 228
Query 238 CCGGCTATAA-GGAAGAAGCATGGTGAATATATGCTGA-GAGAGCTTGTTAAGAGATGGG 295
|| || ||| |||| ||||||| ||||| |||||| | ||||||||| |||||| |||
Sbjct 229 CCATCTTTAAGGGAA-AAGCATGATGAATGTATGCT-ACGAGAGCTTGCTAAGAGGTGGA 286
Query 296 CTAACCATAAAGTTCTGGTTAGA-TGGTTATCCCGCTTCTTCGACTATCTT-GACCG-TT 352
| ||||||| || |||||||| | ||| | | || | |||| || || || ||
Sbjct 287 ATGCCCATAAACTTTTGGTTAGATTATTTA-GCAGAAGGTTGGTCTAT-TTAGA-CGATT 343
Query 353 ACTTTGTTCCTCGGAGAAA--TCTTCTAACACTGAATAG-TGTTGGCTTGACA-TCCTTT 408
|||| || || | ||| |||| | ||||| | | |||||||||| | | |||
Sbjct 344 CCTTTCTT--TCTAAAAAAGGCCTTCCATCACTG-AGGGAAGTTGGCTTGA-ATTGCTTC 399
Query 409 CGCGACCTGGTTTATCAAGAGATACAGTCCAAT-GCCAAAGACGCTGTACTAGAACTTAT 467
||||||| |||||||| || || |||||| || ||| ||| ||| || ||| ||||||
Sbjct 400 CGCGACCAGGTTTATCGTGAAATGCAGTCC-ATGGCCGCAGAAGCTATATTAGCACTTAT 458
Query 468 TCATAAAGAACGTGAGGGTGAACAGATTGATAGATCACTAT-TGAAAAACGTAATAGATG 526
|||||||||||||||||||||||| ||||||||| ||| | ||| ||||||||||||||
Sbjct 459 TCATAAAGAACGTGAGGGTGAACAAATTGATAGAGAACT-TGTGAGAAACGTAATAGATG 517
Query 527 TCTATTGTGG-GAATGGAATGGGAGAGA-TGGTAAAATACGAAGAGGATTTTGAAAG-CT 583
||| |||| | |||||| |||||| | | |||||| ||||||||||||||||| ||
Sbjct 518 TCT-TTGTTGAGAATGGGATGGGA-ACTCTAAAAAAATATGAAGAGGATTTTGAAAGGCT 575
Query 584 TCTTGCTTCAAGATTCTGCATCTTACTATTCTCGCAAGGCCTCAAAGTGGAGCCAGGAGG 643
| ||||||||||| |||| |||||||||||| ||||||| |||| ||||| ||| ||||
Sbjct 576 -CATGCTTCAAGATACTGCTTCTTACTATTCTAGCAAGGCATCAAGGTGGATCCAAGAGG 634
Query 644 ATTCTTGTCCTGATTACATGCGAAAGGCTGAGGAGTGTCTA-AAACTGGAGAAGGAGAGA 702
| ||||||| |||||||| || |||| || | ||||| || ||| ||||| |||||||
Sbjct 635 AGTCTTGTCTTGATTACACGCTAAAGCCTCAACAGTGTTTACAAAG-GGAGAGGGAGAGA 693
Query 703 GTCACTAACTACCTTCATTCAACCACTGAGCCGAAATTACTTG 745
|||||| ||||||||||| |||||||||| || ||| || |||
Sbjct 694 GTCACTCACTACCTTCATCCAACCACTGAACCCAAACTATTTG 736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110139995730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5