BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg311412

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G03103.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   558    1e-158


> AT1G03103.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr1:747197-748057 
FORWARD LENGTH=640
Length=640

 Score =  558 bits (302),  Expect = 1e-158
 Identities = 365/394 (93%), Gaps = 10/394 (3%)
 Strand=Plus/Plus

Query  1    ATGATTCTTGCAATGTTAGCCCTTGTAATAGCCACCGTTCTATACGGTGGAGCCACCACG  60
            |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  23   ATGATTCTTGCAATATTAGCCCTTGTAATAGCCACCTTTCTATACGGTGGAGCCACCACG  82

Query  61   GTCCAAGCCGGATGTA-ATGACGCTCTGACCAGCCTTTCCCCTTGCCTCAATTACCTCAA  119
            |||||||| ||||| | | ||| |||||||||||||||||||||| ||  ||||||||||
Sbjct  83   GTCCAAGCTGGATGCAGA-GACACTCTGACCAGCCTTTCCCCTTGTCTTTATTACCTCAA  141

Query  120  CGGTGGCTCAACGTCACCTTCTTCGAATTGTTGTAGTCAATTTTCCACGGTGGTTCAATC  179
            |||||||||| |||||||||||| || ||||||| |||||||||||||||||||||||||
Sbjct  142  CGGTGGCTCATCGTCACCTTCTTGGAGTTGTTGTCGTCAATTTTCCACGGTGGTTCAATC  201

Query  180  TTCACCGGAATGTTTGTGCT-ATGTGGTTAATAGCAATGAAAGCTCATTTTCA-GGGTTC  237
            |||||||||||||||||||| | |||||||||||||| ||||||||||||| | ||||||
Sbjct  202  TTCACCGGAATGTTTGTGCTCA-GTGGTTAATAGCAACGAAAGCTCATTTT-ATGGGTTC  259

Query  238  AAATTTAACCGGACTTTGGCTCTCAATCTCCCTACCGCTTGCAATGTTCAAACTCCATCA  297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  260  AAATTTAACCGGACTTTGGCTCTCAATCTCCCTACCGCTTGCAATGTTCAAACTCCATCA  319

Query  298  CCTAGCCAGTGTAACACAGGAAGTAACAG-ACCAAGCACGTCT-CCGGCGAATACTCCTG  355
            ||||||| ||||||||| ||  ||||| | ||||| ||||| | ||||||||||||||||
Sbjct  320  CCTAGCCTGTGTAACACCGGTGGTAAC-GTACCAACCACGT-TGCCGGCGAATACTCCTG  377

Query  356  TAGGTTCACCTCAAAGTGCTCCTTCACCGTCAGG  389
            |||||||||||| |||||||||||||||||||||
Sbjct  378  TAGGTTCACCTCGAAGTGCTCCTTCACCGTCAGG  411



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23308644208


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5