BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311427
Length=1542
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03270.1 | Symbols: | CBS domain-containing protein with a ... 1650 0.0
AT4G14240.1 | Symbols: | CBS domain-containing protein with a ... 285 9e-76
> AT1G03270.1 | Symbols: | CBS domain-containing protein with
a domain of unknown function (DUF21) | chr1:799191-802436 FORWARD
LENGTH=1500
Length=1500
Score = 1650 bits (893), Expect = 0.0
Identities = 955/986 (97%), Gaps = 0/986 (0%)
Strand=Plus/Plus
Query 557 AGGTTCTTGATGCTGTAATTGGGCATAATGACACACTATTTAGGCGAGCTCAGCTCAAAG 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 515 AGGTTCTTGATGCTGTAATTGGGCATAATGACACACTATTTAGGCGAGCTCAGCTTAAAG 574
Query 617 CCCTTGTCTCAATTCACAGCCAGGAGGCTGGTAAGGGGGGTGAACTGACACACGAGGAAA 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 CCCTTGTCTCAATTCACAGCCAGGAGGCTGGTAAGGGGGGTGAACTGACACACGAGGAAA 634
Query 677 CAATGATTATAAGTGGAGCCCTGGATTTGAGCCAGAAGACTGCTGAGGAAGCTATGACGC 736
||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 635 CAATGATTATAAGCGGAGCTCTGGATTTGAGCCAGAAGACTGCTGAGGAGGCTATGACGC 694
Query 737 CAATTGAATCAACATTTTCGCTGGATGTTAATACAAAGTTAGACTGGGAAACAATTGGAA 796
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 695 CAATTGAATCAACATTTTCGCTGGATGTAAATACAAAGTTAGACTGGGAAACAATTGGAA 754
Query 797 AAATACTGTCACGAGGTCATAGCCGAATCCCAGTCTACTTAGGGAATTCGAAAAATATCA 856
||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 755 AAATACTGTCACGGGGTCATAGCCGAATCCCGGTCTACTTAGGGAATCCGAAAAATATCA 814
Query 857 TTGGGCTTCTATTGGTTAAGAGTCTTCTAACTGTACGAGCAGAGACAGAGGCACCTGTAA 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TTGGGCTTCTATTGGTTAAGAGTCTTCTAACTGTACGAGCAGAGACAGAGGCACCTGTAA 874
Query 917 GTTCTGTTTCCATCAGAAAGATCCCAAGGGTTCCATCAGACATGCCATTGTACGATATCC 976
| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 875 GCTCTGTTTCCATCAGGAAGATCCCAAGGGTTCCATCAGACATGCCATTGTATGATATCC 934
Query 977 TCAATGAGTTTCAAAAGGGAAGCAGTCACATGGCTGCAGTTGTCAAAGTTAAAGACAGAG 1036
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 935 TCAATGAGTTTCAAAAGGGAAGCAGTCACATGGCTGCAGTTGTCAAAGTCAAAGACAAAG 994
Query 1037 ATAAAATGAATAACATGCAGTTGCTGAGTAATGGCGAAACACCAAAAGAAAATATGAAGT 1096
|||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 995 ATAAAAAGAATAACATGCAGTTACTGAGTAATGGCGAAACACCCAAAGAAAATATGAAGT 1054
Query 1097 TTTATGAGAGTAGTAATTTAACGGCTCCTTTGTTGAAGCATGAATCCCATGATGTTGTTG 1156
|||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1055 TTTACCAGAGTAGTAATTTAACAGCTCCTTTGTTGAAGCATGAATCCCATGATGTAGTTG 1114
Query 1157 TTGATATTGATAAAGTACCAAAGCATGTGAAAAATAGGGGAAGAAATTTCCAACAGCACG 1216
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1115 TTGATATTGATAAAGTACCAAAGCATGTGAAAAATAGGGGAAGAAACTTCCAACAGAACG 1174
Query 1217 GTACTGTGACAAGAGACTTACCGCGTTTGTTGGATGATAACGAGGATGCAGAAGTGATTG 1276
|||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1175 GTACTGTGACGAGAGACTTACCGTGTTTGTTGGAAGATAACGAGGATGCAGAAGTGATTG 1234
Query 1277 GCATCATCACGTTAGAGGATGTCTTTGAAGAACTTCTACAAGCAGAAATCGTGGATGAAA 1336
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1235 GCATCATCACCTTAGAGGATGTCTTTGAAGAACTTCTACAAGCAGAAATTGTGGATGAAA 1294
Query 1337 CTGATGTTTACATCGATGTACATAAAAGGGTACGTGTGGCGGCAGCTGCAGCAGCAGCTG 1396
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1295 CTGATGTTTACATCGATGTACATAAAAGGGTACGTGTGGCGGCGGCTGCAGCAGCAGCTG 1354
Query 1397 TATCATCCATAACACGTGCTTCACCAGCGGAGATTCAAAGCAAGGTAGGACAAACTGTGA 1456
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1355 TATCATCTATAACACGTGCTTCACCAGCGGAGATTCAAAGCAAGGTAGGACAAACGGTGA 1414
Query 1457 AGAAGCTTGTTGGGAAAGAAGCACGAGGTACAAAGAATTACACAACAAAAATCACAGAGC 1516
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 AGAAGCTAGTTGGGAAAGAAGCACGAGGTACAAAGAATTACACAACAAAAATCACAGAGC 1474
Query 1517 CTCTTTTAGCAGAATCAGATAGATAG 1542
||||||||||||||||||||||||||
Sbjct 1475 CTCTTTTAGCAGAATCAGATAGATAG 1500
Score = 869 bits (470), Expect = 0.0
Identities = 503/519 (97%), Gaps = 2/519 (0%)
Strand=Plus/Plus
Query 1 ATGGTTGTTATGAGCACTTTGGCGTTGGTAAGAGCCGCTTACTCGCTCAACAGTTTCGTC 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTTGTTCTGAGCACTTTGGCGTTGGTAAGAGCCGCTTACTCGCTCAACAGTTTCGTC 60
Query 61 TTTGAAGCCGAAGACATCCGATTCGGTTCTCCGTGGTGGTTCGTTGTCGTCGGTGTGGCG 120
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 61 TTTGAAGCCGAGGACATCCGATTCGGTTCTCCGTGGTGGTTCGTCGTCGTCGGTGTCGCG 120
Query 121 TGTTTCCTCGTACTCTTCGCCGGAATAATGTCGGGACTCACGCTCGGACTGATGTCCCTT 180
||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 121 TGTTTCCTCGTACTCTTCGCCGGAATAATGTCGGGTCTCACACTCGGACTAATGTCCCTT 180
Query 181 GGTCTCGTTGAGCTAGAGATTCTCCAACAGAGTGGTTCCTCCGCCGAGAAAAAACAGGCC 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGTCTCGTTGAGCTCGAGATTCTCCAACAGAGTGGTTCCTCCGCCGAGAAAAAACAGGCC 240
Query 241 GCTGCAATCTTACCAGTGGTAAAGAAGCAGCATCAACTTCTTGTGACTCTACTTCTTTGC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTGCAATCTTACCAGTGGTAAAGAAGCAGCATCAACTTCTTGTGACTCTACTTCTTTGC 300
Query 301 AATGCAGCTGCTATGGAGGCTCTTCCTATATGCCTGGATAAGATATTCCATCCTTTTGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AATGCAGCTGCTATGGAGGCTCTTCCTATATGCCTGGATAAGATATTCCATCCTTTTGTG 360
Query 361 GCTGTTTTACTCTCAGTTACTTTTGTTCTTGCTTTTGGAGAGATCATTCCGCAAGCTATA 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 GCTGTTTTACTCTCAGTTACTTTTGTTCTTGCTTTTGGAGAGATAATTCCGCAAGCTATA 420
Query 421 TGCTCGAGATACGGACTTGCTGTTGGCGCAAACTTTTTGTGGCTTG-TTCGCATTTTGAT 479
||||| ||||| |||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 421 TGCTCTAGATATGGACTTGCTGTTGGCGCAAACTTTTTGTGG-TTGGTTCGCATTTTGAT 479
Query 480 GATACTCTGCTATCCCATTGCTTACCCTATTGGAAAGGT 518
|||| |||||||||| |||||||||||||| ||||||||
Sbjct 480 GATAATCTGCTATCCGATTGCTTACCCTATCGGAAAGGT 518
> AT4G14240.1 | Symbols: | CBS domain-containing protein with
a domain of unknown function (DUF21) | chr4:8204347-8207408
REVERSE LENGTH=1985
Length=1985
Score = 285 bits (154), Expect = 9e-76
Identities = 348/442 (79%), Gaps = 12/442 (3%)
Strand=Plus/Plus
Query 593 TATTTAGGCGAGCTCAGCTCAAAGCCCTTGTCTCAATTCACAGCCAGGAGGCTGGTAAGG 652
|||||||||| |||||| | ||||| ||||| || ||||||||||| |||||||||||||
Sbjct 692 TATTTAGGCGGGCTCAGTTGAAAGCTCTTGTATCCATTCACAGCCAAGAGGCTGGTAAGG 751
Query 653 GGGGTGAACTGACACACGAGGAAACAATGATTATAAGTGGAGCCCTGGATTTGAGC-CAG 711
| ||||| || ||||| || || || | || || |||||||| || ||||||| | ||
Sbjct 752 GAGGTGAGCTTACACATGATGAGACGACAATCATTAGTGGAGCTCTTGATTTGA-CTGAG 810
Query 712 AAGACTGCTGAGGAAGCTATGACGCCAATTGAATCAACATTTTCGC-TGGATGTTAATAC 770
|||||||| | ||||| ||||| |||||||| || || || || | ||||||| ||| |
Sbjct 811 AAGACTGCACAAGAAGCCATGACACCAATTGAGTCTACCTTCTC-CTTGGATGTAAATTC 869
Query 771 AAAGTTAGACTGGGAAACAATTGGAAAAATACTGTCACGAGGTCATAGCCGAATCCCAGT 830
||| || || |||||| | || || || || ||| ||||||| |||||||| | || ||
Sbjct 870 AAAATTGGATTGGGAAGCTATGGGGAAGATTCTGGCACGAGGCCATAGCCGCGTTCCTGT 929
Query 831 CTACT-TAGGGAATTCGAAAAATATCATTGGGCTTCTATTGGTTAAGAGTCTTCTAACTG 889
||||| | |||||| ||||||| | || || ||||| ||||| ||||||||||| || |
Sbjct 930 CTACTCT-GGGAATCCGAAAAACGTTATCGGACTTCTCTTGGTGAAGAGTCTTCTTACAG 988
Query 890 TACGAGCAGAGACAGAGGCACC-TGTAAGTTCTGTTTCCATCA-GAAAGATCCCAAGGGT 947
| || | || |||||| | || ||| || | |||| || | | ||| ||||||||
Sbjct 989 TTCGCCCTGAAACAGAGAC-CCTTGTCAGCGCAGTTTGTAT-ACGCCGGATTCCAAGGGT 1046
Query 948 TCCATCAGACATGCCAT-TGTACGATATCCTCAATGAGTTTCAAAAGGGAAGCAGTCACA 1006
|||| | || ||||| | | || ||||| || ||||||||||||||||||||||||||||
Sbjct 1047 TCCAGCTGATATGCC-TCTCTATGATATACTGAATGAGTTTCAAAAGGGAAGCAGTCACA 1105
Query 1007 TGGCTGCAGTTGTCAAAGTTAA 1028
||||||||||||| || |||||
Sbjct 1106 TGGCTGCAGTTGTGAAGGTTAA 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76104026220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5