BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311431
Length=1950
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03300.1 | Symbols: ATDUF1, DUF1 | DOMAIN OF UNKNOWN FUNCTIO... 1524 0.0
AT2G47230.2 | Symbols: DUF6 | DOMAIN OF UNKNOWN FUNCTION 724 6 ... 464 1e-129
> AT1G03300.1 | Symbols: ATDUF1, DUF1 | DOMAIN OF UNKNOWN FUNCTION
724 1 | chr1:811033-813086 REVERSE LENGTH=2013
Length=2013
Score = 1524 bits (825), Expect = 0.0
Identities = 1238/1423 (87%), Gaps = 85/1423 (6%)
Strand=Plus/Plus
Query 11 CGATTTTCAAAGATTGTGAAGTTGAGATCTGT-TCTCAAGAAGAAGGGTTTAGAAACGCT 69
|||||||||||||||||||||| ||||||| | ||| ||||||| |||||||||||||||
Sbjct 5 CGATTTTCAAAGATTGTGAAGTAGAGATCT-TCTCTGAAGAAGATGGGTTTAGAAACGCT 63
Query 70 TGGTACAGAGCAATTCTGGAAGAAACCCCAACGAATCCGA-ATTCGGAAAGCAAAAAGCT 128
|||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||
Sbjct 64 TGGTACAGAGCAATTCTGGAGGAAACCCCAACGAATCCGACA-TCGGAAAGCAAAAAGCT 122
Query 129 TCG-TGTTCGTT--AT-ATGAACTTGCTCAACAAAGAAGG---TGCGTCTCC-CCAAACG 180
|| | || ||| || | ||| | ||||||||||||||| | ||||||| || ||||
Sbjct 123 ACGAT-TTAGTTACATGACGAAGTCGCTCAACAAAGAAGGTTCTTCGTCTCCTCC-AACG 180
Query 181 GTCGAACAGGGGTTTATCCGACCAGTCCCGCCGGAAAATCTATACAACGGCGTCGTTTTA 240
||||||||| |||| || |||| || ||||||||||| || |||||||||||||||||
Sbjct 181 GTCGAACAGAGGTTCATAAGACCGGTTCCGCCGGAAAACCTTTACAACGGCGTCGTTTTT 240
Query 241 GAGGAAGGAACGGTGGTTGATGCTGATTACAAACA-AGGATGGTGGACCGGTGTTGTGAT 299
|||||||||||| |||||||||||||||||||||| | ||||| | ||||| ||||||||
Sbjct 241 GAGGAAGGAACGATGGTTGATGCTGATTACAAACACA-GATGGAGAACCGGCGTTGTGAT 299
Query 300 AAAGAAAATGGAGGACGGGAGCTATTTGGTT-TACTTCGATTTTCCACCAGACATTATTC 358
||| ||||||||| ||| |||||||||||| | |||||||| |||||||||||||||||
Sbjct 300 AAATAAAATGGAGAACGACAGCTATTTGGTTCT-CTTCGATTGTCCACCAGACATTATTC 358
Query 359 AGTTCGAGACAAAGCATTTGCGAGCACATCTTGACTGGACCGGTAAGGAATGGGTCCGAC 418
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 359 AGTTCGAGACAAAGCATTTGCGAGCACATCTTGACTGGACGGGTTCGGAATGGGTCCAAC 418
Query 419 CAGAAGTTAGGGAACTGAGTAAGTCCATGTTTAGCCCCGGGACATTAGTTGAAGTAAGTT 478
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 419 CAGAAGTCAGGGAACTGAGTAAGTCCATGTTTAGCCCTGGGACATTAGTTGAAGTAAGTT 478
Query 479 GTGTAATAGATAAAGTTGAAGTTTCCTGGGTTACTGCAATGATAGTTAAGGAGATTGAGG 538
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 479 GTGTAATAGATAAAGTTGAAGTTTCCTGGGTTACGGCAATGATAGTTAAGGAGATTGAGG 538
Query 539 ATAGTGGTGAGAAGAAATTTATAGTGAAGGCATGGAATAAACACTTGAGATGTAGTGTTG 598
| |||||||||||||||||||||||||||| ||| |||||||||||||| || ||||||
Sbjct 539 AGAGTGGTGAGAAGAAATTTATAGTGAAGGTATGCAATAAACACTTGAGTTGCCGTGTTG 598
Query 599 ATGAGGCAAAACCAAAAATGACCGTTGATTCACGCTGTGTTAGGCCTACACCGCCTC-CT 657
|||||||||||||||| ||||| ||||||||| ||||||||||||||| |||||||| |
Sbjct 599 ATGAGGCAAAACCAAACATGACGGTTGATTCATGCTGTGTTAGGCCTAGACCGCCTCTTT 658
Query 658 TTTTCGGTTGAAGAGTATGACTTGCTTGATTGTGTAGAGGTGTTGTTTCATGGTTCCAGT 717
||||| ||||||||||||||||||| |||||||||||| | | ||||||||||||| |||
Sbjct 659 TTTTC-GTTGAAGAGTATGACTTGCGTGATTGTGTAGA-G-G-TGTTTCATGGTTCGAGT 714
Query 718 TGGCGTCAAGGGGTGGTGATGGGAGTTCTCACTGAGAAACAGTACATGGTTAGGTTAGAG 777
||||||||||||||||||| |||||||| || |||||||||||||| ||||| ||||||
Sbjct 715 TGGCGTCAAGGGGTGGTGAAGGGAGTTCACATTGAGAAACAGTACACGGTTACTTTAGAG 774
Query 778 GCTACAAAGGATGACTTGGAATTGAAACACTCGGATCTTAGGCCTTTTAAGGTGTGGGAA 837
||||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 775 GCTACCAAGGATAAGTTGGTCGTGAAACACTCGGATCTTAGGCCTTTTAAGGTGTGGGAA 834
Query 838 GATGGGGTTTGGCATAACGGACCACAGCAAAAACCCGTAAACGAAAGTCCTTCCAACGAC 897
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
Sbjct 835 GATGGGGTTTGGCATAACGGACCACAGCAGAAACCCGTAAAGGAAAGTCCTTCCAACGCC 894
Query 898 ATCAAACAGAAGCCAATGTGCTCTTCTCCTGGTGCTAGGCCAATG-----------G-CT 945
||||||||||||||||||||||||||| ||||||||||||||||| | ||
Sbjct 895 ATCAAACAGAAGCCAATGTGCTCTTCTTCTGGTGCTAGGCCAATGACTCCTAAAATGGCT 954
Query 946 ACAAAACATACGAGAAGATCTCTAAATCCTGAGGAAAATGGCGAG-ACATTCTCTGTAGC 1004
||||||||| |||||| |||| | || ||||||||||||| |||| | | ||||||||||
Sbjct 955 ACAAAACATGCGAGAATATCTTTTAACCCTGAGGAAAATGTCGAGGA-ACTCTCTGTAGC 1013
Query 1005 TGAAACTGTTGCTGCCACTGGAAAG----AA--G--GGG--TCGGCAGAAGAATCTGTTT 1054
||||||||||||||||||||||||| || | ||| | | |||||||||||||||
Sbjct 1014 TGAAACTGTTGCTGCCACTGGAAAGTTGGAAAAGATGGGGATTG-CAGAAGAATCTGTTT 1072
Query 1055 CATTTGTAACACCGTTGAAACAAAACGCTGAAGGAATGAAATCTCCTGA-G-AAGACA-- 1110
||| |||||||||||||||||||| | || || || | | ||| | || |||
Sbjct 1073 CATGTGTAACACCGTTGAAACAAA-CA--GA-GGCC--AA--CGC-TGAAGGAA-ACAAA 1122
Query 1111 CTTGAGCCGATGAGGAATCAGAATAGCTTGGGAAATGATTCAACTCAACAGAAGTTGCCA 1170
|||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 1123 CTTGAGCCGATGCGGAATCAGAATTGCTTGAGAAATGATTCAACTCAACAGATGTTGCCT 1182
Query 1171 GAGGAGGAGAATAGCAAAGATGGGAGCAGAAAAAGGAAAAGAGAAGAA---------T-A 1220
|||||||||||||||||||| ||||||| ||||||||| ||||||||| | |
Sbjct 1183 GAGGAGGAGAATAGCAAAGACGGGAGCACAAAAAGGAAGAGAGAAGAAAAACACAACTCA 1242
Query 1221 -C--CT---G--A---ATGAAACTGATGGGACATGTAATGTTTCAGAGGCTGAGATAAGT 1269
| || | | |||||| ||||||||| ||||||| ||||||| ||||||| |||
Sbjct 1243 GCTTCTTCCGTTATGGATGAAATTGATGGGACTTGTAATGGTTCAGAGTCTGAGATTAGT 1302
Query 1270 GATACAGGTAAAATTATCTGCAACAATGATGATGCTGATGATCAGCCATTCTCTACTGAG 1329
|||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1303 AATACAGGTAAAAGTATCTGCAACAATGATGATGTTGATGATCAGCCGCTCTCTACTGAG 1362
Query 1330 CTATCC-TCTTATCAGAGCTCAAGTGTGGTGCATAGTTTTGCT 1371
||| || | ||||||||||| ||||||||| | |||||||||
Sbjct 1363 CTA-CCATATTATCAGAGCTTGAGTGTGGTGAACAGTTTTGCT 1404
Score = 721 bits (390), Expect = 0.0
Identities = 516/576 (90%), Gaps = 12/576 (2%)
Strand=Plus/Plus
Query 1371 TTCTCCTTTTGAAAAGAAGTTGCCGTTTTGGAAGA-CATATGAAACAAATGAGTTGTACA 1429
||||||||||| ||||||||| ||||||||||| | | ||||||||| |||| |||||||
Sbjct 1446 TTCTCCTTTTGCAAAGAAGTTACCGTTTTGGAAAAGC-TATGAAACAGATGAATTGTACA 1504
Query 1430 AATCAGTACCACAAACTCCTCATTTCAGCCCGTTGCTCAAGGCTAAAGAAGATATTCGCG 1489
||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1505 AATCATTACCACAAAGTCCTCATTTCAGCCCGTTGTTCAAGGCTAAAGAAGATATCCGCG 1564
Query 1490 AATGGTCAGCGGTTGGTATGATGGTGACTTTCTATGGTTTATTAGAGGAAGTTAAACATC 1549
||||||| ||||||||||||||||||||||||||| |||||||| ||||||| ||| |||
Sbjct 1565 AATGGTCCGCGGTTGGTATGATGGTGACTTTCTATTGTTTATTAAAGGAAGTCAAAGATC 1624
Query 1550 TGCAGCTCGATGATTCCTCGAGCAAACTAAGTTGCCTC-GCTAGTTCTTTTGCGGAGCTC 1608
||||||||||||||||||| |||||||||||| ||||| | ||||||||| |||||||||
Sbjct 1625 TGCAGCTCGATGATTCCTCAAGCAAACTAAGTAGCCTCAG-TAGTTCTTTGGCGGAGCTC 1683
Query 1609 GAGAAGCACGGTTTTGACGTTGCAAATCCACAGTCACGGATCAACAAATTGTTGTCTTTC 1668
|||||||||||||| ||||| || ||||| ||||||||||| |||| ||||| | ||
Sbjct 1684 GAGAAGCACGGTTTCAACGTTACAGATCCATTGTCACGGATCAGCAAAGTGTTGCCCCTC 1743
Query 1669 CAAGATAAGCGAGCAAAGAAAGCAGAGGAAAGAAAATGTCTTGAGAAGAAGATTGAA-GC 1727
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1744 CAAGATAAGCGAGCAAAGAAAGCGGAGGAAAGAAAATGTCTTGAGAAGAAGATTGAATG- 1802
Query 1728 TAAAGAGATCGAAAGGCAGAGGTTTGAAGAAGAATT-GATTGAGTTTGAACGCATAATGC 1786
| |||||||||||||| |||||||||||||||| || | | || ||||||||||||||
Sbjct 1803 TGAAGAGATCGAAAGGAAGAGGTTTGAAGAAGAGTTTGCT-GACTTTGAACGCATAATTA 1861
Query 1787 TTGATATGAAGAGACAAGCATTGGTTGCCAAAGAGAAGAAAGAAGCGACGGAAAAAAGGA 1846
|||| | |||||||||||||||||||||||| ||||||||||||||| | || |||||||
Sbjct 1862 TTGAGAAGAAGAGACAAGCATTGGTTGCCAAGGAGAAGAAAGAAGCGGCTGACAAAAGGA 1921
Query 1847 TTGTTGAAATGAAGTCACGTGCAGAAACCATTGATCAGGAGATTAAAGATGAGGAGCTTG 1906
||| |||||||||| || ||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1922 TTGGTGAAATGAAGACATGTGCAGAAACCATTGATCAAGAGATCAAAGATGAGGAGCTTG 1981
Query 1907 AGTTTCAGACAAGTAACTGTCTCGGCTCCATGGTAA 1942
|||||||||||| |||||||| |||||||||||
Sbjct 1982 AGTTTCAGACAA----CTGTCTCGACTCCATGGTAA 2013
> AT2G47230.2 | Symbols: DUF6 | DOMAIN OF UNKNOWN FUNCTION 724
6 | chr2:19387020-19390234 FORWARD LENGTH=2459
Length=2459
Score = 464 bits (251), Expect = 1e-129
Identities = 476/582 (82%), Gaps = 26/582 (4%)
Strand=Plus/Plus
Query 1375 CCTTTTGAAAAGAAGTTGCCGTTTTGGAAGACATATGAAACAAATGA-GT-TGTACAAAT 1432
||||||| |||||||| ||||||||||||| ||||| ||| | || || || | ||||
Sbjct 1673 CCTTTTGCAAAGAAGTCACCGTTTTGGAAGATGTATGAGACACAGGAGGTATGCA-AAAT 1731
Query 1433 CAGTACCACAAACTCCTCATTTCAGCCCGTTGCTCAAGGCTAAAGAAGATA-TTCGCGAA 1491
|| |||||| | ||| |||||||||||| || || ||||||||||||| | | ||||||
Sbjct 1732 -AGCACCACAGAGTCCACATTTCAGCCCGCTGTTCGAGGCTAAAGAAGA-ACTCCGCGAA 1789
Query 1492 TGGTCAGCGGTTGGTATGATGGTGACTTTCTATGGTTTATTAGAGGAAGTTAAACATCTG 1551
||| |||| |||||||||||||||| |||||||||||||||||||||||| ||| | |||
Sbjct 1790 TGGACAGCCGTTGGTATGATGGTGAGTTTCTATGGTTTATTAGAGGAAGTAAAAAACCTG 1849
Query 1552 CAGCTCGATGATTCCTCGAGCAAACTAAGTTGCCTC-GCTAGTTCTTTTGCGGAGCTCGA 1610
|| ||||||| |||| | |||| ||| || ||||| | | |||||||||| ||||| ||
Sbjct 1850 CAACTCGATGTTTCCCCAAGCACTCTAGGTAGCCTCAG-TTGTTCTTTTGCCGAGCTAGA 1908
Query 1611 GAAGCACGGTTTTGACGTTGCAAATCCACAGTCACGGATCAACAAATTGTTGTCTTTCCA 1670
|||||||||||||||||||||| || |||||||| ||||||||| || ||||| ||||
Sbjct 1909 GAAGCACGGTTTTGACGTTGCAGCCCCTCAGTCACGAATCAACAAAATGCTGTCTCTCCA 1968
Query 1671 AGATAAGCGAGCAAAGAAAGCAGAGGAAAGAAAATGTCTTGAGAAGAAGATTGAAGCTAA 1730
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1969 AGATGAGCGAGCAAAGAAAGCAGAGGAAAGAAAAGGTCTTGAGAAGAAGATTGAAGC-AG 2027
Query 1731 -AGAGATCGAAAGGCAGAGGTTTGAAGAAGAATTGATTGAGTTTGAACGCATAATGCTTG 1789
|||||| ||| |||| | || |||||||||| || |||||| |||| || ||| || |
Sbjct 2028 GAGAGATAGAAGGGCACACGTATGAAGAAGAAATGGCTGAGTTAGAACTCAAAATTCTGG 2087
Query 1790 ATATGAAGAGACAAGCAT-TGGTTGCCAAAGAGAAGAAAGAAGCGACGGAAAAAAG-GAT 1847
| ||||||||||| || ||||||| ||||||| ||| ||||| || || ||| | ||
Sbjct 2088 AGCTGAAGAGACAA-CAAGTGGTTGCGAAAGAGATGAAGGAAGCTACAGACAAA-GTGAC 2145
Query 1848 T-GTTGAAATGAAGTCACGTGCAGAAACCATTGATCAGGAGATTA-AAGAT--GAGGAGC 1903
|| ||| |||| ||| |||||||| ||| |||| ||||| | ||||| |||| |
Sbjct 2146 AAGTGGAA-TGAAATCATATGCAGAAATGATTAATCAAGAGAT-AGAAGATTTGAGG--C 2201
Query 1904 TTGAGTTTCAGACAAGTAACTGTCTCGGCTCCATGGTAATAA 1945
||||||||||| ||| | || ||| | ||||||||||||||
Sbjct 2202 TTGAGTTTCAGTCAACTG-CT-TCT-G-CTCCATGGTAATAA 2239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96585848580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5