BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311447
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03490.1 | Symbols: ANAC006, NAC006 | NAC domain containing ... 599 1e-170
> AT1G03490.1 | Symbols: ANAC006, NAC006 | NAC domain containing
protein 6 | chr1:871874-872906 FORWARD LENGTH=846
Length=846
Score = 599 bits (324), Expect = 1e-170
Identities = 685/846 (81%), Gaps = 77/846 (9%)
Strand=Plus/Plus
Query 1 ATGAAGTCTT-TTCCGGTTGGATCACGGTTTCT-TCCTAAAGATCTAGGTTTGGTGAGGT 58
|||||| || |||||||||||||||||||| | ||| | |||||||| |||||||||
Sbjct 1 ATGAAG-ATTCTTCCGGTTGGATCACGGTTT-TGTCCGACGGATCTAGGGTTGGTGAGGC 58
Query 59 TTTATCTTCGAAACATGGTGGAGAGGAAGCAGAGCAGTTTCATAACAACTATGGACGTCT 118
||||||||||||||| ||||||||| || ||||||||||||||||||||||||||| ||
Sbjct 59 TTTATCTTCGAAACAAGGTGGAGAGAAATCAGAGCAGTTTCATAACAACTATGGACATCC 118
Query 119 A-CATGGACGAGCCGTGGCTTCTTCCTCACGTAAACAATCCTCTGTTCAAGAACAAGGAG 177
| || ||| | || ||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 119 ACCA-AGACTACCCTTGGCTTCTTCCTCACGTAAACAATCCTTTGTTCAATAACAACGAG 177
Query 178 TGGTACTACTTTGTTCAGCTGACTAAACGA-----C--G-T-TCAAGCGTGCAACGGAAG 228
|||||||||||||||| ||| ||| ||||| | | | | |||||| || ||||||
Sbjct 178 TGGTACTACTTTGTTCCGCTTACTGAACGAGGTGGCAAGATATTAAGCGTACACCGGAAG 237
Query 229 GTACCCGGAAGAGGAGGAAGCGAAGGCGGCACTTGGAGAAGCAACGATGGGAAAGAAGAG 288
||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 238 GTAGCCGCAAGAGGAGGAAGCGAAGGCGGCACTTGGAGAAGCAACGATGGGAAAAAAGAG 297
Query 289 ATCAAGGACGG--ACAT-C-AAA--G-GA---G-T----G--A-TGA-G--CAGCAAAA- 326
||||||||||| |||| | ||| | || | | | | ||| | | |||||
Sbjct 298 ATCAAGGACGGACACATGCAAAAGGGTGATGGGTTACGAGCAAGTGATGACCTCCAAAAG 357
Query 327 GTTGGTCTTGTGTCGGATCCGATACAAGAAACAGAAGAAGGTCAACAAGATTAGACGCGT 386
||| ||||||||||||||||||||||||||| || ||| |||||| || || ||| |||
Sbjct 358 GTT-GTCTTGTGTCGGATCCGATACAAGAAAGAGGCGAACGTCAACGAGTTTGGACTCGT 416
Query 387 TAATCATCAAGCTCATCAGACTCAGGCTGATTTAACCGGTTTAACTGATGAGCTTGAGAA 446
||| ||||| |||||||||||||||| || |||||||||||| ||||| |||||||||
Sbjct 417 TAACCATCAGGCTCATCAGACTCAGGATGCTTTAACCGGTTTTGCTGATCAGCTTGAGAT 476
Query 447 GATGCCAGAGGGACAAGAAGATCGTGAGGAGCAAGAAGAGGTTGACTTAACCGATTTTCC 506
||||| ||||||||||||||| |||||| || ||||||||| ||| ||||||| |||| |
Sbjct 477 GATGCTAGAGGGACAAGAAGACCGTGAGCAGAAAGAAGAGGCTGATTTAACCGGTTTTGC 536
Query 507 TGATGAG-CTTGAGACGATGCTAGAGGGACAAGAAGATTGTGAGCAACAACAAGAGGCTG 565
|||| || |||||||||||||||||||||||||||||| |||||| | | |||| ||||
Sbjct 537 TGAT-AGCCTTGAGACGATGCTAGAGGGACAAGAAGATCATGAGCAGCCAGAAGATGCTG 595
Query 566 AGTTAACCGGTTTTTCTGATGACCCT-GAGTCGATGTT-G-----C-T-A-GAT-G-GAG 613
| |||||||||||| ||||| | ||| ||| ||||| | | | | | ||| | |||
Sbjct 596 ATTTAACCGGTTTTGCTGAT-AGCCTTGAGACGATGCTAGAGGGACATGAAGATCGTGAG 654
Query 614 -A---AGAAGAT-C-G--TGA-C-GTTAC-C--caacaacaacaacaacaacagcaagaa 660
| |||||| | | | | | ||||| | |||||||||||||||||||| ||| ||
Sbjct 655 CAGCCAGAAGAGGCTGAATTAACCGTTACTCAACAACAACAACAACAACAACAACAACAA 714
Query 661 gaa-g--a-gat-accgcaaca--ac--a-gcagcaagaagaTGATGATATGATGGTGCT 710
|| | | || | | || || | | |||||||| | |||||| ||||||| ||
Sbjct 715 CAACGTCAAGAAGATTGTGACGTTACTCAAG-AGCAAGAAAAAGATGATGTGATGGTACT 773
Query 711 GATGGACAATCCTAATGATGCCCTCGCATTGGGGAATTATGAGTTTGTTGATCTAACTTG 770
||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 774 GATAAACAATCCTAATGATGCCCTCGCATTGGGGAATTATGAGATTATTGATCTAACTAG 833
Query 771 GGTTGA 776
||||||
Sbjct 834 GGTTGA 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39735210277
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5