BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311450
Length=2415
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03530.1 | Symbols: ATNAF1, NAF1 | nuclear assembly factor 1... 3210 0.0
> AT1G03530.1 | Symbols: ATNAF1, NAF1 | nuclear assembly factor
1 | chr1:880496-883391 REVERSE LENGTH=2601
Length=2601
Score = 3210 bits (1738), Expect = 0.0
Identities = 2245/2469 (91%), Gaps = 117/2469 (5%)
Strand=Plus/Plus
Query 1 ATGGTTGGATTTCCCCCTAATCCAGCTATAACAGTTAAAGAAGAGCTAGCTTTGCAAGTT 60
||||||||||||||| |||||| ||| | ||| ||| ||||||||||| ||||||||||
Sbjct 54 ATGGTTGGATTTCCCGCTAATCAAGCAAAAACCGTTGAAGAAGAGCTACCTTTGCAAGTC 113
Query 61 GTAGTCGATCAAGACCCCAAGGTAAAAACTTTCAAGGACTCTATCGATTTCCCCTCCATC 120
|||| ||||||||||||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 114 GTAGCCGATCAAGACCCCAAGGTAAAAACTTTCAAGGACTCTTTTGATTTCCCTTCCATC 173
Query 121 GATTCCTATCTGGATTTCGATTCCGTCACTTGGT-TGGGGAATTATCGGAACGTTGAGGA 179
||||||| || |||||||||||| ||||||||| | | || | ||||||||||||||||
Sbjct 174 GATTCCTTTCCGGATTTCGATTCTATCACTTGGTCT-GAGAGTAATCGGAACGTTGAGGA 232
Query 180 GTTTAGCATAGAAGATACGGACTTTGATTTCTTTGAGGACGGA-ATGGAGATACCTCAAG 238
|||||||||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct 233 TTTTAGCATAGAAGATACGGACTTTGATTTCTTTGAGTAC-CACATGGAGATACCTCAAG 291
Query 239 AAGGCGTTGTTACTGTTAGC---G----GTGT------AAT--G----C-G----TCCTG 274
||| ||||||||||||||| | |||| ||| | | | | |||
Sbjct 292 AAGATGTTGTTACTGTTAGCGATGTAATGTGTCCGGAGAATCAGACTACTGTTAATTCTG 351
Query 275 AGTCGATTGAAGTAAAGCCTGA-G-CTTT-GTGATGACATGTCTGGGGAAGTTGGTGTGA 331
|||||||||| | ||||| ||| | |||| |||||||||||||||||||||||||||||
Sbjct 352 AGTCGATTGAGGGAAAGCTTGAGGTCTTTAATGATGACATGTCTGGGGAAGTTGGTGTGA 411
Query 332 GTTTGGTTAGGTCTGAGCCGATGGTTGAAGTAAAGCCTGTGCTTTGTGATGTCATGTCTG 391
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 GTTCGGTTAGGTCTGAGTCGATGGTTGAAGTAAAGCCTGTGCTTTGTGATGTCATGTCTG 471
Query 392 AGGAAGTTGGAGTGAGCTCAATTAAGTCTGAGTCGTTGGTTGAGGTAGAGCCCAATGTTT 451
||||||||||||| | || | || |||||||||||||||||||||||
Sbjct 472 AGGAAGTTGGAGT--G--------AG-C----TC---GGTTGAGGTAGAGCCCAATGTTT 513
Query 452 GTGTTGACATGTCTGCAAACGGTGGGGATGAACCAGCAGTGAAAGATTCAGAACCGGTTG 511
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 514 GTGTTGAGATGTCTGCAAACGGTGGGGATGAACCAGCAGTAAAAGATTCAGAACCGGTTG 573
Query 512 TTTCTGAAAACTCTAGGTCAATGGAAGGTGAGACTGAGCCAGTTGTTGTGTCTG-T---T 567
||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
Sbjct 574 TTTCTGAAAACTCGAGGTCAATGGAAGGTGAGACTGAGCCAGTTGTTGTGTCTGATGCGT 633
Query 568 C-----CTTGTCCCACCATGGATTTGGATGAATCAGGGTTGAAGAAAACAGATGAGAGTT 622
| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 634 CTGTTGCTTGTCCCACCATGGATTTGGATGAATCAGGGTTGAAGAAAACTGATGAGGGTT 693
Query 623 TGGCTTGTTCTATTGAAGTAGGGTTGAAGAAGGTAAGTTTGGCCATGGATGATGATGAGA 682
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 694 TGGCTTGTTCTATTGAAGTAGGGTTGGAGAAGGTAAGTTTGGCCGTGGATGATGATGAGA 753
Query 683 AGAGTGATGGGGATAAGGGAAAAATTGATTCTGCTGAGTCTGACAGTGAAACCTCGAGCT 742
||||||||| || |||||| |||| ||||||||||||||||| || |||||||||||||
Sbjct 754 AGAGTGATGAGGCTAAGGGGGAAATGGATTCTGCTGAGTCTGAGAGCGAAACCTCGAGCT 813
Query 743 CTTCTTCAAGCAGTAGTGATAGTAGTAGCAGtgaagaagaggagagtgatgaggatgaga 802
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 814 CTTCTGCAAGCAGTAGTGATAGTAGTAGCAGTGAAGAAGAGGAGAGTGATGAGGACGAGA 873
Query 803 gcgacgaagaggaaaagaagaaggaagaaaagtttgaagaTCACATGGTTATGGGGAAAG 862
||||| |||||||||| ||||||||||||||||||| | | ||||||||| |||||||||
Sbjct 874 GCGACAAAGAGGAAAATAAGAAGGAAGAAAAGTTTG-A-A-CACATGGTTGTGGGGAAAG 930
Query 863 AGGATGATTTAGCAGGGGAACTTGAAGAGGGTGAGATAGAGAATTTAgatgaggagaatg 922
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 AGGATGATCTAGCAGGGGAACTTGAAGAGGGTGAGATAGAGAATTTAGATGAGGAGAATG 990
Query 923 gggatgacgaaattgaggat---gacga--a-gatgatgatgctgatgatgac---gatg 973
|||||||||| ||||||||| || || | |||||||||| |||||||||| ||||
Sbjct 991 GGGATGACGATATTGAGGATGAGGATGATGATGATGATGATGATGATGATGACGATGATG 1050
Query 974 a--tgaa-gcgatggttgcttggagcaatgatgaggatgatgaCCTCGGTTTACAAACAA 1030
| |||| | |||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1051 ATGTGAATGAGATGGTTGCTTGGAGCAATGATGAGGATGATGACCTTGGTTTGCAAACAA 1110
Query 1031 AAGAACCTATAAGGTCAAAGAATGAGCTCAAGGAGCTTCCTCCAGTTCCAGCTGTGGATG 1090
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1111 AAGAACCTATCAGGTCAAAGAATGAGCTCAAGGAGCTTCCTCCAGTTCCTCCTGTGGATG 1170
Query 1091 TCACTCTGGAACCACATCATGCCACACTTCCTGTTGGAGTTGTTCTTTCGGTAATGAGCA 1150
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 TCACTCTGGAACCACACCATGCCACACTTCCTGTTGGAGTTGTTCTTTCGGTAATGAGCG 1230
Query 1151 AACAAGTAATAGTTGAGGGAATGGAAAAGCATAGTCCTTTGACTGAAGGTTCTATCCTTT 1210
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 CACAAGTAATAGTTGAGGGAATGGAAAAGCATAGTCCTTTGACTGAAGGTTCTATCCTTT 1290
Query 1211 GGGTAACTGAAAAAAGAACGCCATTGGGACTGGTGGATGAGATCTTTGGACCAGTAAAGT 1270
|| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1291 GGATAACTGAAAAAAGAACGCCATTGGGACTGGTGGATGAGATCTTTGGACCCGTGAAGT 1350
Query 1271 GCCCTT-TCTATATTGTGAGGTTCAATTCAGAGAGTGAAGTGCCAGAAGGGGTTAGTCAA 1329
|||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1351 GCCCTTAT-TATATTGTGAGGTTCAATTCAGAGAGTGAAGTGCCAGAAGGGGTTTGTCAA 1409
Query 1330 GGGACACCTGTCTCATTTGTCGCCGATTTCGCTCAACATATTCTCAATATCAAGGAACTG 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 GGGACACCTGTCTCATTTGTCGCCGATTTCGCTCAACATATTCTCAATATCAAGGAACTG 1469
Query 1390 CAGAAGAAAGGTTACGATGCATCTGGTGATAACGACGAGGAGATACCAGACGAGCTAGAG 1449
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1470 CAGAAGAAAGGTTACGATGCATCTGGGGATAACGACGAGGAGATACCAGACGAGCTAGAG 1529
Query 1450 TTCTCAGATGATGAAAAAGAAGCCGAATACAGAAGAATGCAGAAGATGGAAAAGAGAGGA 1509
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1530 TTCTCAGATGATGAAAAAGAAGCCGAATACAGAAGAATGCAGAAGTTGGAAAAGAGAGGA 1589
Query 1510 ATGATGATTGACCAGAAAACGGGTAACACAAGGAACAAGAAGAAGAAAAACCGAGATCTC 1569
||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| |
Sbjct 1590 ATGATGAGTGACCAGAAAACCGGTAACACCAGGAACAAGAAGAAGAAAAACCGAGATCCC 1649
Query 1570 GGAAGGCCTACCAGCAGTTACTCAGGGGAATGGACAGA-GAACCAGGGATCTAGTTCCCT 1628
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| ||
Sbjct 1650 GGAAGGCCTACAAGCAGTTACTCAGGGGAATGGAC-GAAGAACCAGGGATCTAGTTCTCT 1708
Query 1629 ATCCTCAAACCGTTCTGATCCTCAAATGGGTGGTCCGCTTTCAAATCTTGGTCCGCGTCC 1688
||| |||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 1709 ATCGTCAAACCGTTCTGATCCTCAAATGGGTGGTCCGC-----------G-TCC---TC- 1752
Query 1689 TCAAACGGACGGTTTTCCTCCAAACAATGCAGCATGGCGGCCCCAGAGTAATCAGCAGAA 1748
||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1753 --AAATGGACGGTTTTCCTCCAAACAATGCAGCATGGAGACCCCAGAGTAATCAGCAGAA 1810
Query 1749 CCCATATCAGCTTCCTCCTATACCTAATCAGATGGGAATGCCCAATCTAGCCCCAATGCA 1808
||||||||||||||||||||||||||||||||||||||||| | | | | |
Sbjct 1811 CCCATATCAGCTTCCTCCTATACCTAATCAGATGGGAATGC--A-----G----A-T--A 1856
Query 1809 GATACCTTTCATGGCAATGCAAAATCAAAATCAAATGATGTTCCAACCGCAGTTCAATGG 1868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 ----CCTTTCATGGCAATGCAAAATCAAAATCAAATGATGTTCCAACCGCAGTTCAATGG 1912
Query 1869 TGGCCAGATGCCAATGCCAGGTGGACCTGGAGGCTTAAACTTCTTTCCAGGACAGGCTTC 1928
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1913 TGGCCAGATGCCAATGCCAGGTGGACCGGGAGGCTTAAACTTCTTTCCAGGACAGGCTTC 1972
Query 1929 AGCGCCATGGCCTGCATTGGTTGGTCAGAATTGTTTCAACCAACCA-TTTGGGATGGGTC 1987
|||||||||||||||| |||| |||||||||||||||||||||| | |||||||||||||
Sbjct 1973 AGCGCCATGGCCTGCAATGGTAGGTCAGAATTGTTTCAACCAAC-AGTTTGGGATGGGTC 2031
Query 1988 GCGGTATTCAGCAGCAGCCATTACCAAATGAGCTGAGTTTTAATCTGTTTTCTCAAGGTC 2047
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2032 GTGGTATTCAGCAGCAGCCATTACCAAATGAGCTGAGTTTTAATATGTTTTCTCAAGGTC 2091
Query 2048 TTCAAATGCACCCGCCACAGTCCCAAATGCACCGGCCACAGTCTCAAATGAATCCACATT 2107
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2092 TTCAAATGCACCCACCACAGTCCCAAATGCACCGGCCACAGTCTCAAATGAATCCACAGT 2151
Query 2108 TCCAAATGCCACCACAGTTCCAAACCAACCCGCAATCTCCAATGAACCCGCAGTACCAAA 2167
|||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||
Sbjct 2152 TCCAAATGCCACCACAGTTCCAGCCCCACCAGCAATCTCCAATGAACCCGCAGTACCAAA 2211
Query 2168 TGATGCATCGACCACAGTCTCCAATGAACCCGCAGTTCCAAATGCAACCACAATCTGATG 2227
||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 2212 TGATGCACCGACCACAGTCTCCAGCGAACCCGCAGTTCCAAATGCAAGCACAATCTGATG 2271
Query 2228 TGCGACCACCACAGTCACAAATCCCGCAGTCCCCAACAAATCTGCAGTCCCCAATGGAAT 2287
||||||||| ||||||||||||||||||||| |||| || |||||||||||||||||
Sbjct 2272 TGCGACCACTACAGTCACAAATCCCGCAGTCACCAAGTGATTTGCAGTCCCCAATGGAAC 2331
Query 2288 CACAGTCTCAAGGGTTTAGCAGCGGGCAGTCTTCTGAACGGGGAAGGGGCTTCCGTGGTC 2347
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2332 CACAATCTCAAGGGTTTAGCAGCGGGCAGTCTTCTGAACGGGGAAGGGGCTTCCATGGTC 2391
Query 2348 GTGGGAGGGGTAG-GGGTCGGGGTCGCTCCGGACGTGGGCGAGGTCGAGGCCGGCAACAG 2406
|||| || ||||| ||| |||||||||| |||||||||||||||| ||||||||||||||
Sbjct 2392 GTGGTAGAGGTAGAGGG-CGGGGTCGCTTCGGACGTGGGCGAGGTAGAGGCCGGCAACAG 2450
Query 2407 TCTGGATGA 2415
|||||||||
Sbjct 2451 TCTGGATGA 2459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119929102005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5