BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311464
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03720.1 | Symbols: | Cysteine proteinases superfamily prot... 736 0.0
> AT1G03720.1 | Symbols: | Cysteine proteinases superfamily protein
| chr1:924996-926373 REVERSE LENGTH=825
Length=825
Score = 736 bits (398), Expect = 0.0
Identities = 668/790 (85%), Gaps = 51/790 (6%)
Strand=Plus/Plus
Query 1 ATGGGGAAAAGCGAGTCAAGCATAGGTGGCAAACC--TAAGACGCCAAAAGGT-CCTAAT 57
|||||||||| |||| || ||| ||||||||||| |||| |||||||| || ||||||
Sbjct 32 ATGGGGAAAAACGAGCCATCCATTGGTGGCAAACCTATAAGGCGCCAAAA-GTACCTAAT 90
Query 58 GAGCTTAAGCTTGAAGCCGCGGCTGCTAGGAAGAAAGGCCCAAATATCACACCAGTGACT 117
||| |||||| ||||||||| |||||| ||||||||| |||| ||||||||| ||||||
Sbjct 91 GAGATTAAGCGTGAAGCCGCAACTGCTAAGAAGAAAGGTCCAACTATCACACCGGTGACT 150
Query 118 CAAA--G-TGACGATGGGGTTAGATCAAAACCATGTTACTTAAATTGC-A---ATAT--- 167
|||| | |||| |||||||||||||||||| |||||||||||||||| | ||||
Sbjct 151 CAAACTGATGACAATGGGGTTAGATCAAAACTATGTTACTTAAATTGCAATTCATATAAG 210
Query 168 A--GAGATATGTTGGGCCATCGCATTGACACGTCTTCTCCAGG-CTATTTACAACATAAC 224
| ||||||||||||||||||||||||||||||||||| || | | |||||||| |||||
Sbjct 211 ATCGAGATATGTTGGGCCATCGCATTGACACGTCTTCTGCAAGTC-ATTTACAATATAAC 269
Query 225 TCGAGA-TAATATAACTAACCGCAAAAGCTTCCTTCATGATGACCTCGTCGTGCATTTGA 283
|| ||| || ||| || |||| ||| ||| ||||||||||||||||||||||||||
Sbjct 270 TCAAGAGTAC-ATAGCTGGCCGCCTAAGATTCGATCATGATGACCTCGTCGTGCATTTGA 328
Query 284 AGACGaaaaaaaaTCCAGGCAAACGACCGGCGTCGTTGAAACTTCAGAACCTTAAAGATG 343
||| |||||||| || |||||||||||||| |||| |||||||| |||||||||||||||
Sbjct 329 AGATGAAAAAAACTCGAGGCAAACGACCGGGGTCGATGAAACTTAAGAACCTTAAAGATG 388
Query 344 CTATTAAACATATAGCAGTTAATGGATTGCTTAAAATTAA-AGCAA-CGGGAGTTACAAA 401
||||||| || ||||||||||| || ||||| |||| || || || || ||| | ||
Sbjct 389 CTATTAATCACATAGCAGTTAAGGGGTTGCTAAAAAA-AAGAG-AATCGA-AGT--CGAA 443
Query 402 GGCTGGGAGCGAGATTGGATATCATGGCAAGTGGAACTTTTCAATGGAGAAATGTCCTTC 461
|||||||||||| |||||| ||||| ||||||||||||||| |||||||||||||||||
Sbjct 444 GGCTGGGAGCGATATTGGACATCATACCAAGTGGAACTTTTCCATGGAGAAATGTCCTTC 503
Query 462 AGTGGATTTCATCAAGTCCAAAGTTGATATCTCTCCAGTTGTCATATCGTTTGATATAGC 521
| ||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| |
Sbjct 504 AAAGGATTTCATCAAGTCCAAAGTTGATATCTCTCCGGTTGCCATAGCGTTTGATATAAC 563
Query 522 TGACGAATT-CCATTTCATTGGCAATGTTA--AAG--GT-A--T-----------CTACA 562
| || |||| ||| |||||||||||||||| ||| || | | |||||
Sbjct 564 TCAC-AATTTCCAGTTCATTGGCAATGTTAGTAAGAAGTCAAATGGATTGAGTATCTACA 622
Query 563 AGGTAAGCGGCGTAGATATGGAAGATGGCGAAGTAGAGGGG-CACGCAGTTCTCATTGTC 621
| |||||||||||||| |||||||||||||| | || |||| |||| |||||||||||||
Sbjct 623 ATGTAAGCGGCGTAGACATGGAAGATGGCGATGCAG-GGGGACACGTAGTTCTCATTGTC 681
Query 622 GGCTATGGCTACACCAAAGACAATCGACTATTCTTTTTGATTCAGAATAGTTGGGGAGAA 681
|||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||
Sbjct 682 GGCTATGGCTACACCAAAGAAAATAAACTATTCTTCTTGATTCAGAATAGTTGGGGAGAG 741
Query 682 GATTGGGGTGTGAAAGGTTTTGGACGAATCTTCATAGATGAC-ATATCCACGACCACACT 740
|||||||| |||||||||||||| || ||||||||||||||| | |||| |||||||||
Sbjct 742 GATTGGGGCGTGAAAGGTTTTGGGCGGATCTTCATAGATGACGAG-TCCAAGACCACACT 800
Query 741 TGTTTATCCA 750
||||||||||
Sbjct 801 TGTTTATCCA 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36871863898
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5