BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg311471

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G03810.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pr...   562    1e-159


> AT1G03810.1 | Symbols:  | Nucleic acid-binding, OB-fold-like 
protein | chr1:958759-959609 FORWARD LENGTH=432
Length=432

 Score =  562 bits (304),  Expect = 1e-159
 Identities = 383/420 (91%), Gaps = 9/420 (2%)
 Strand=Plus/Plus

Query  1    ATGTCGATGACGGCGGATACTAAAGCGACGACTGCGCCGAAACGGAAACCAGTGTTCGTA  60
            ||||||| ||||||| ||||||| ||||||||||||||||| || ||||||||||| || 
Sbjct  1    ATGTCGACGACGGCGAATACTAACGCGACGACTGCGCCGAAGCGTAAACCAGTGTTTGTG  60

Query  61   AAGGTGAATCAGCTCAAACCAGGAACCAGCGGCCATACTCTGATCGTGAAAGTCCTTGAA  120
            |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  61   AAGGTGGATCAGCTCAAACCAGGAACCAGCGGCCATACTCTGATCGTCAAAGTCCTTGAA  120

Query  121  TCGAATCCCGTCAAACCAGCCATTCGTAGAAGCTCGTTGA--C-TCAGTCAA-TTCGGTC  176
            ||||||||||| ||||| || ||||||| ||| |||||||  |  ||| ||| |||  ||
Sbjct  121  TCGAATCCCGTTAAACCGGCGATTCGTAAAAGTTCGTTGACGCAGCAGCCAATTTC-ATC  179

Query  177  TCCTCGTATTGCTGAGTGTCTAATCGGTGACGATACTGGATGCATTCTTTTCACCGCTCG  236
            ||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct  180  TCCTCGTATCGCTGAGTGCCTAATTGGTGACGATACTGGATGCATTCTTTTCACCGCTCG  239

Query  237  CAATGACCAAGTTGATCTAATGAAGACTGGAGCAACAGTTATACTGAGGAATGCGAAGAT  296
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  CAACGACCAAGTTGATCTAATGAAGACTGGAGCAACAGTTATACTGAGGAATGCGAAGAT  299

Query  297  CGACTTGTTCAAGGACACGATGAGAATGGTTGTTGACAGATGGGGACGCATTGAAGTCAC  356
            |||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | ||
Sbjct  300  CGACTTGTTCAAGGACACTATGAGAATGGCTGTTGACAGATGGGGACGCATTGAAATAAC  359

Query  357  -GGATCCTGTTTCGTTTGAGGTTAATCGAGGC-AACAATCTCTCTCTGATCGAGTATGAA  414
             || |||||||||||| |||||||| || ||| ||||||||||||||| |||||||||||
Sbjct  360  CGG-TCCTGTTTCGTTCGAGGTTAACCG-GGCCAACAATCTCTCTCTGGTCGAGTATGAA  417



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20660044839


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5