BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311479
Length=1809
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03905.1 | Symbols: | P-loop containing nucleoside triphosp... 1441 0.0
AT1G03900.1 | Symbols: ATNAP4, NAP4 | non-intrinsic ABC protein... 830 0.0
AT5G44110.1 | Symbols: ATPOP1, ATNAP2, POP1 | P-loop containing... 693 0.0
> AT1G03905.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:993400-995784 FORWARD
LENGTH=1141
Length=1141
Score = 1441 bits (780), Expect = 0.0
Identities = 845/876 (96%), Gaps = 6/876 (1%)
Strand=Plus/Plus
Query 940 AAAATGGCGGAGAAAGATGCGACGGCGAGCGGCGATGACGCCATTAGAGTTAGCGGTATG 999
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 76 AAAATGGCGGAGAAAGATGCGACGGCGAGTGGCGATGACGCCATTAGAGTTAGCGGTATG 135
Query 1000 CAGTTCGCATACGAAGTTGAGGATCCTATATTCTTCGACTTCAACCTCGATCTTCCAGCT 1059
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 136 CAATTCGCATACGAAGTTGAGGATCCAATATTCTTCGACTTCAACCTCGATCTTCCAGCT 195
Query 1060 GGTTCTCGCTGCCTTCTGGTTGGTGCCAATGGATCTGGCAAGACAACCTTACTGAAGATT 1119
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 196 GGTTCTCGCTGTCTTCTGGTTGGTGCCAATGGATCTGGCAAGACAACCTTATTGAAGATT 255
Query 1120 CTGGCTGGAAAGCATATGGTGGGAGGAAAGAACGTTGTTCAAGTTCTTAGCCGCTCAGCT 1179
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 256 CTGGCTGGAAAGCATATGGTGGGAGGAAAGAACGTTGTACAAGTTCTTAGCCGCTCGGCT 315
Query 1180 TTCCATGATACTCAACTTGTTTGCAGTGGTGACTTGTCTTATCTTGGAGGATCTTGGAGT 1239
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 316 TTCCATGATACTCAACTTGTTTGCAGTGGTGACTTGTCTTACCTTGGAGGATCATGGAGT 375
Query 1240 AAAACCGTTGGTTCAGCTGGCGAGGTTCCTCTCCAGGGAGATTTCTCAGCAGAACATATG 1299
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 376 AAAACCGTTGGTTCAGCTGGAGAGGTTCCTCTCCAGGGAGATTTCTCAGCAGAACATATG 435
Query 1300 ATATTT---G--G-AGGAACTGATCCCGTGAGAAGAGAAAAGTTGATTGATCTTCTTGAT 1353
|||||| | | ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 436 ATATTTGGAGTTGAAGGAACTGATCCCGTGAGAAGAGAAAAACTGATTGATCTTCTTGAT 495
Query 1354 ATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAAACGGCGAGTGCAGATA 1413
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 496 ATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAAACGGCGCGTGCAGATA 555
Query 1414 TGCATGGGACTCTTACATCCATTCAAGGTATTATTACTCGACGAGGTCACTGTTGACCTA 1473
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 556 TGTATGGGACTCTTACATCCATTCAAGGTGTTATTACTCGATGAGGTCACTGTTGACCTA 615
Query 1474 GACGTCGTTGCAAGGATGGATTTGCTGGAATTTTTCAAAGAAGAATGTGATCAGAGAGGA 1533
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 616 GACGTCGTTGCAAGGATGGATTTGCTGGAATTCTTCAAAGAAGAATGTGATCAGAGAGGA 675
Query 1534 GCTACAATTGTATATGCAACTCACATATTCGACGGGCTAGAGACATGGGCGACACATTTG 1593
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 GCTACAATCGTGTATGCAACTCACATATTCGACGGGCTAGAGACATGGGCGACACATTTG 735
Query 1594 GCCTATATTCAGGACGGTGAGCTGAATCGTTTATCGAAAATGACAGATATTGACGAGCTG 1653
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 736 GCCTACATTCAGGACGGTGAGCTGAATCGTTTATCGAAAATGACAGATATTGAGGAGCTG 795
Query 1654 AAAACTTCACCCAACCTCCTTTCCGTGGTAGAATCTTGGCTCCGTTCTGAAATCAAACTC 1713
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 796 AAAACTTCACCCAACCTCCTCTCCGTGGTAGAATCTTGGCTCCGTTCTGAAATCAAACTC 855
Query 1714 GTGAAGAAAAAGAAGAAGCCTGTGGCACCATGGAAACCATCTCCATTCGATAACTCTCCT 1773
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 856 GTGAAGAAGAAGAAGAAGCCTGTGGCGCCATGGAAACCATCTCCATTCGATAACTCTCCT 915
Query 1774 TTTAGATCATCAAGACACATGGCTTATTACCGATGA 1809
||||||||||| ||||||||||||||||||||||||
Sbjct 916 TTTAGATCATCGAGACACATGGCTTATTACCGATGA 951
> AT1G03900.1 | Symbols: ATNAP4, NAP4 | non-intrinsic ABC protein
4 | chr1:991139-993118 FORWARD LENGTH=1198
Length=1198
Score = 830 bits (449), Expect = 0.0
Identities = 469/479 (98%), Gaps = 0/479 (0%)
Strand=Plus/Plus
Query 1 ATGTCGTTCGAGGAAGAAGAAGAGGAGGAGACATTCGAGCATACACTTCTCGTGGTGCGT 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 114 ATGTCGTTCGAGGAAGAAGAAGAGGAGGAAACATTCGAGCATACACTTCTCGTGGTGCGT 173
Query 61 GAGGTTTCCGTTTACAAGATCCCGCCGCGAACCACATCCGGCGGATACAAGTGCGGCGAA 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GAGGTCTCCGTTTACAAGATCCCGCCGCGAACCACATCCGGCGGATACAAGTGCGGCGAA 233
Query 121 TGGCTTCAATCCGATAAGATCTGGTCTGGTAGACTCCGCGTCGTATCGTGCAAGGATCGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TGGCTTCAATCCGATAAGATCTGGTCTGGTAGACTCCGCGTCGTATCGTGCAAGGATCGA 293
Query 181 TGCGAGATCCGCCTCGAGGATTCGAATTCCGGCGATCTTTTCGCGGCTTGTTTCGTGGAT 240
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 294 TGCGAGATCCGCCTCGAGGATTCGAATTCCGGTGATCTTTTCGCAGCTTGTTTTGTGGAT 353
Query 241 CCTGAACGGAGAGAGAACTCTGTCGAGCCGTCTCTCGATTCGTCTAGGTATTTCGTTCTC 300
|||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 354 CCTGGACGTAGAGAGAACTCTGTAGAGCCGTCTCTCGATTCGTCTAGGTATTTCGTTCTC 413
Query 301 AGGATCGATGACGGGAGAGGGAAGTATGCGTTTATCGGGCTAGGATTCGCTGAGAGGAAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 AGGATCGATGACGGGAGAGGGAAGTATGCGTTTATCGGGCTAGGATTCGCTGAGAGGAAC 473
Query 361 GAAGCGTTTGATTTCAATGTCGCGTTATCGGATCATGAAAAGTACGTTAGGAGGGAGAAA 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 474 GAAGCGTTTGATTTCAATGTTGCGTTATCGGATCATGAAAAGTACGTTAGGAGGGAGAAA 533
Query 421 GAGAAGGAGACAGGGGAAACGAGTGAGAGCGATAATCATATTGATATCCATCCCGCCGT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 534 GAGAAGGAGACAGGGGAAACGAGTGAGAGCGATAATCATATTGATATCCATCCTGCCGT 592
Score = 333 bits (180), Expect = 4e-90
Identities = 196/204 (96%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 619 GGTGAAACTATAAGAATCAACGTGAAGCCGAAACCAACAACAAATGGCACTGGGATGCTC 678
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 GGTGAAACCATAAGAATCAACGTGAAGCCGAAACCAACAACAAATGGCACTGGGATGCTC 671
Query 679 TCAGCTGCTCTTTCAGGAACCGGGAAGCCAAAACCTCTAGCACTTGCCCCACCTCCCAAA 738
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 672 TCAGCTGCTCTTTCAGGAACGGGGAAGCCAAAACCTCTAGCACTTGCCCCACCCCCCAAA 731
Query 739 GCTGCTGGAATAACCAGGTCTCCTTTACCGCCTCCTCCAAATGATCCTGTCGCTTCAAGG 798
||||| ||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 732 GCTGCCGGAGTAACCAGGTCTCCTTTACCTCCTCCTCCAAACGATCCCGTCGCTTCAAGG 791
Query 799 ATTGCATCTGATGGCTGCAAGGAA 822
||||||||||||||||||||||||
Sbjct 792 ATTGCATCTGATGGCTGCAAGGAA 815
> AT5G44110.1 | Symbols: ATPOP1, ATNAP2, POP1 | P-loop containing
nucleoside triphosphate hydrolases superfamily protein |
chr5:17754064-17755742 REVERSE LENGTH=1077
Length=1077
Score = 693 bits (375), Expect = 0.0
Identities = 667/806 (83%), Gaps = 28/806 (3%)
Strand=Plus/Plus
Query 940 AAAATGGCGGAGAAAGATGCGACGGCGAGCGG-CGATGACGCCATTAGAGTTAGCGGTAT 998
||||||||||||||| |||||| || |||| || | || ||||| ||||| || ||
Sbjct 68 AAAATGGCGGAGAAAAATGCGA--GC--GCGGTGGACGGTGCAATTAGGGTTAGTGGAAT 123
Query 999 GCAGTTCGCATACGAAGTTGAGGATCCTATATTCTTCGACTTCAACCTCGATCTTCCAGC 1058
|||||| | ||||| ||| | |||||||| |||||||| || || ||||||||||| ||
Sbjct 124 GCAGTTTTCTTACGATGTTCAAGATCCTATTTTCTTCGATTTTAATCTCGATCTTCCCGC 183
Query 1059 TGGTTCTCGCTGCCTTC-TGGTTGGTGCCAATGGATCTGGCAAGACAACCTTACTGAAGA 1117
||| ||||| |||| || |||||||||||||||||||||| || || || ||| ||||||
Sbjct 184 TGGATCTCGTTGCC-TCTTGGTTGGTGCCAATGGATCTGGGAAAACTACGTTATTGAAGA 242
Query 1118 TTCTGGCTGGAAAGCATATGGTGGGAGGAAAGAACGTTGTTCAAGTTCTTAG-CCGCTCA 1176
|||| |||||||| |||||||| ||||||||||| ||||| ||||| ||| | ||||||
Sbjct 243 TTCTTGCTGGAAAACATATGGTTGGAGGAAAGAATGTTGTACAAGTGCTT-GATCGCTCA 301
Query 1177 GC-TTTCCATGATACTCAACTTGTTTGCAGTGGTGACTTGTCTTATCTTGGAGGATCTTG 1235
|| ||| |||||||| | |||||||| |||||||| |||||||| || |||||||| ||
Sbjct 302 GCATTT-CATGATACAGAGCTTGTTTGTAGTGGTGATTTGTCTTACCTAGGAGGATCATG 360
Query 1236 GAGTAAAACCGTTGGTTCAGCTGGCGAGGTTCCTCTCCAGGGAGATTTCTCAGCAGAACA 1295
||||||||| | |||||| ||||| || |||| ||||| ||||| ||||||||||||||
Sbjct 361 GAGTAAAACTGCTGGTTCTGCTGGTGATATTCCACTCCAAGGAGACTTCTCAGCAGAACA 420
Query 1296 TATGATATTTGGAG--G-A---ACTGATCCCGTGAGAAGAGAAAAGTTGATTGATCTTCT 1349
|||||||||||||| | | | |||||| | |||||||| |||||||||||||||||
Sbjct 421 TATGATATTTGGAGTTGAAGGGATTGATCCTTTCAGAAGAGAGAAGTTGATTGATCTTCT 480
Query 1350 TGATATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAAACGGCGAGTGCA 1409
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 481 TGATATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAGACGTCGAGTGCA 540
Query 1410 GATATGCATGGGACTCTTACATCCATTCAAGGTATTATTACTCGACGAGGTCACTGTTGA 1469
||||| ||||| || |||||||| |||||||||||| |||| || || || ||||||||
Sbjct 541 AATATGTATGGGTCTATTACATCCGTTCAAGGTATTACTACTGGATGAAGTTACTGTTGA 600
Query 1470 CCTAGACGTCGTTGCAAGGATGGATTTGCTGGAATT-TTTCAAAGAAGAATGTGATCAGA 1528
||| ||||| ||||| |||||||||||| |||| || ||| |||||||||||||| ||||
Sbjct 601 CCTCGACGTTGTTGCTAGGATGGATTTGTTGGAGTTCTTT-AAAGAAGAATGTGAACAGA 659
Query 1529 GAGGAGCTACAATTGTATATGCAACTCACATATTCGACGGGCTAGAGACATGGGCGACAC 1588
|||||||||||||||||||||||||||| || ||||||||||| ||||||||||| | |
Sbjct 660 GAGGAGCTACAATTGTATATGCAACTCATATTTTCGACGGGCTCGAGACATGGGCTAGTC 719
Query 1589 ATTTGGCCTATATTCA-GGACGGTGAGCTGAATCGTTTAT-CGAAAAT-GACAGATATTG 1645
||||||| || ||| | ||| || |||||||| | | | | || | || || ||
Sbjct 720 ATTTGGCTTACATTAATGGA-GGAGAGCTGAAAC-TCTCGGCCAAGTTAGAT-GAGATCA 776
Query 1646 ACGAGCTGAAAACTTCACCCAACCTCCTTTCCGTGGTAGAATCTTGGCTCCGTTCTGAAA 1705
| || || ||||| ||||| || || || || || || ||| |||||||||| |||||||
Sbjct 777 AGGATCTCAAAACCTCACCAAATCTGCTATCTGTTGTTGAAGCTTGGCTCCGGTCTGAAA 836
Query 1706 TCAAACTCGTGAAGAAAAAGAAGAAG 1731
|||| | ||| |||||||| ||||
Sbjct 837 CCAAAGT--TGA-GAAAAAGACGAAG 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89507571735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5