BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311482
Length=1713
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03920.1 | Symbols: | Protein kinase family protein | chr1:... 2806 0.0
> AT1G03920.1 | Symbols: | Protein kinase family protein | chr1:1001321-1004383
FORWARD LENGTH=2005
Length=2005
Score = 2806 bits (1519), Expect = 0.0
Identities = 1652/1716 (96%), Gaps = 9/1716 (1%)
Strand=Plus/Plus
Query 1 ATGGATTCTGCGAGAAGTTGGTTTCACAAGTTTCAACCACGAGATAAGCCTCGGAAAAAA 60
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 ATGGATTCTGCAAGAAGTTGGTTTCACAAGTTTCAACCACGAGATAAGCCTCGGAAAAAG 212
Query 61 GACATGTTCTCCGGAAGCGCTTACGGCGGTGGCGCGACAGAAACCACCGCCCCCGACGGA 120
|| ||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||
Sbjct 213 GATATGTTCTCCGGAAGCACTTACGGCGGTGGCGTGACAGAAACCACCGTCCCCGACGGA 272
Query 121 GGAAATGAAACAGAAACGGCGGCCAAACTTCCACCAATAGGCGGTGACGGAGAAGCACTC 180
|||||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct 273 GGAAATGATACAGAAACGGCAACGAAACTTCCACCACTAGGCGGTGACGGAGAAGCACTC 332
Query 181 TCAAATACAACAAAACAGAAAGTTGCTGCAGCCAAACAGTACATTGAGAATCATTATAAG 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 TCAAATTCAACAAAACAGAAAGTTGCTGCAGCCAAACAGTACATTGAGAATCATTATAAG 392
Query 241 GAACAGATGAAGAACCTCAACGAGAGGAAAGAGAGACGAACAACGCTT-GAGAAGAAGCT 299
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 393 GAACAGATGAAGAACCTCAACGAGAGGAAAGAGAGACGAACAACG-TTAGAGAAGAAGCT 451
Query 300 AGCAGATGCAGATGTATGTGAAGAAGACCAAAACAATCTTATGAAGTTTCTTGAGAAGAA 359
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 452 AGCGGATGCAGATGTATGTGAAGAAGACCAAACCAATCTTATGAAGTTTCTTGAGAAGAA 511
Query 360 AGAAACTGAGTACATGAGACTCCAAAGGCATAAAATGGGTGCTGATGATTTCGAACTCTT 419
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 512 AGAAACAGAGTACATGAGACTCCAAAGGCATAAAATGGGTGCTGATGACTTCGAACTCTT 571
Query 420 AACTATGATTGGTAAAGGTGCTTTTGGAGAGGTTCGAGTTGTTAGAGAGATCAACACAGG 479
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 AACTATGATCGGTAAAGGTGCTTTTGGAGAGGTTCGAGTTGTTAGAGAGATCAACACAGG 631
Query 480 TCATGTTTTTGCTATGAAGAAACTCAAGAAATCAGAAATGCTTCGTC-GAGGCCAGGTGG 538
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 632 TCATGTTTTTGCTATGAAGAAACTCAAGAAATCAGAAATGCTTCG-CAGAGGCCAGGTGG 690
Query 539 AGCATGTAAGAGCAGAGAGGAATCTATTGGCAGAAGTAGACAGTAACTGTATAGTGAAGC 598
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 691 AGCATGTAAGAGCAGAGAGGAATCTATTGGCAGAAGTAGATAGTAACTGTATAGTGAAGC 750
Query 599 TTTACTGTTCTTTTCAAGACAATGAGTATCTTTACCTGATAATGGAGTATTTGCCTGGAG 658
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 751 TTTACTGTTCTTTTCAAGACAATGAGTATCTTTATCTGATAATGGAGTATTTGCCCGGTG 810
Query 659 GAGATATGATGACACTTCTGATGAGGAAAGACACTTTAAGTGAATATGAAGCTAAGTTCT 718
| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 811 GCGATATGATGACTCTTCTGATGAGGAAAGACACTTTAAGTGAAGATGAAGCTAAGTTCT 870
Query 719 ACATCGCTGAAGCTGTTCTCGCTATCGAATCTATCCATAACCGCAACTATATCCACAGGG 778
| ||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 871 ATATCGCCGAATCTGTTCTCGCTATAGAATCTATCCATAACCGCAACTATATCCACAGAG 930
Query 779 ACATAAAGCCGGATAACTTGTTGCTTGATAGATATGGACATTTGAGGTTGTCTGATTTTG 838
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 931 ACATAAAGCCGGATAACTTGTTGCTTGATAGATATGGACATTTAAGGTTATCTGATTTTG 990
Query 839 GACTATGTAAGCCATTGGATTGTAGTGTTATTGACGGAGAAGATTTCTCGGTAGGGAATT 898
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 991 GACTATGTAAGCCATTGGATTGTAGTGTTATTGACGGAGAAGATTTCACGGTAGGAAATG 1050
Query 899 CGGGTAGCGGAGGAGGTTCAGAGAGCGTATCAACCACTCCTAAACGCTCGCAGCAAGAAC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 CGGGTAGCGGAGGAGGTTCAGAGAGCGTATCAACCACTCCTAAACGCTCGCAGCAAGAAC 1110
Query 959 AGTTGGAACATTGGCAGAAGAATCGAAGAATGCTTGCTTACTCAACTGTTGGTACACCAG 1018
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1111 AGTTGGAACATTGGCAGAAGAATCGAAGAATGCTTGCTTACTCAACCGTTGGTACACCAG 1170
Query 1019 ACTACATTGCACCCGAAGTCTTGTTAAAGAAAGGATACGGCATGGAATGTGACTGGTGGT 1078
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 ACTACATTGCACCTGAAGTCTTGTTAAAGAAAGGATACGGCATGGAATGTGACTGGTGGT 1230
Query 1079 CACTAGGAGCTATAATGTACGAAATGCTTGTTGGGTATCCACCCTTTTACGCAGACGACC 1138
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1231 CACTAGGAGCTATAATGTACGAAATGCTGGTTGGGTATCCACCCTTTTACGCCGACGACC 1290
Query 1139 CAATGTCCACTTGTAGAAAGATAGTGAATTGGAAAACACATTTGAAGTTCCCTGAAGAAG 1198
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 CAATGTCTACTTGTAGAAAGATAGTGAATTGGAAAACACATTTGAAGTTCCCTGAAGAAT 1350
Query 1199 CAAGGCTATCACGAGAGGCAAGAGATCTTATTGGTAAGCTCTTGTGTAGCGTTAACCAAC 1258
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 CAAGGCTATCACGAGGGGCAAGAGATCTTATTGGTAAGCTCTTGTGTAGCGTTAACCAAC 1410
Query 1259 GACTAGGCTCTACTGGTGCCTCACAAATTAAGGCACATCCTTGGTTTC-AAGGTGTAGAA 1317
|||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| ||
Sbjct 1411 GACTAGGCTCTACTGGTGCCTCCCAAATTAAGGCACATCCTTGG-TTCGAAGGTGTACAA 1469
Query 1318 TGGGAAAATATTTACCAAATTGAAGCTGCGTTTATTCCTGAGGTCAACGACGATTTGGAT 1377
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1470 TGGGAAAAGATTTACCAAATGGAAGCTGCGTTCATTCCTGAGGTCAACGACGATTTGGAT 1529
Query 1378 ACTCAAAACTTTGAGAAGTTCGATGAGGAAGATAATGAAACTCAAGCACCCTCTAGAACA 1437
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1530 ACTCAAAACTTTGAGAAGTTCGATGAGGAAGATAATCAAACTCAAGCACCTTCTAGAACA 1589
Query 1438 GGGCCATGGAGAAAAATGTTATCTTCAAAAGACATAAATTTTGTCGGCTACACATACAAA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1590 GGGCCATGGAGAAAAATGTTATCTTCAAAAGACATAAATTTTGTCGGCTACACATACAAA 1649
Query 1498 AACTTTGAAATCGTCAACGATTATCAAGTCCCCGGTATAGCCGAACTAAAAAAGAAAGAG 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1650 AACTTTGAAATCGTCAACGATTATCAAGTCCCCGGTATAGCCGAACTAAAAAAGAAAGAG 1709
Query 1558 ACAAAATCAAAGAGACCATCGGTAAAGTCACTATTCGAGAGCGAATCAGAGTCCTCGTCG 1617
|||||||||||||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 1710 TCAAAATCAAAGAGACCATCGGTTAAGTCACTATTCGAGAGCGAATCAGA--C-TCGTCA 1766
Query 1618 TCTTCTGGTTCGGAGCAACAGACCATTAACCGGAGCTTTTCGAATCCGACGCCTCGTGGA 1677
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1767 TCTTCTGGTTCGGAGCAACAGACCATTAACCGGAGCTATTCTAATCCGACGCCTCGTGGA 1826
Query 1678 ATGGAACCCAACCTCAGACGTCTAGACTCTGAGTAG 1713
|||||||||||||| ||||||||||| |||||||||
Sbjct 1827 ATGGAACCCAACCTGAGACGTCTAGATTCTGAGTAG 1862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84688319415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5