BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311505
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04180.1 | Symbols: YUC9 | YUCCA 9 | chr1:1104623-1105988 FO... 2056 0.0
AT5G43890.1 | Symbols: YUC5, SUPER1 | Flavin-binding monooxygen... 976 0.0
AT5G25620.2 | Symbols: YUC6 | Flavin-binding monooxygenase fami... 80.5 4e-14
> AT1G04180.1 | Symbols: YUC9 | YUCCA 9 | chr1:1104623-1105988
FORWARD LENGTH=1266
Length=1266
Score = 2056 bits (1113), Expect = 0.0
Identities = 1216/1267 (96%), Gaps = 2/1267 (0%)
Strand=Plus/Plus
Query 1 ATGGAAAATATGTTTAGACTCATGGCAAGTGAAGAATATTTCTCAGACCGGCGATGTGTT 60
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGAGAATATGTTTAGACTCATGGCAAGTGAAGAATATTTCTCAGAGCGGCGATGTGTT 60
Query 61 TGGGTCAACGGTCCGGTTATCGTAGGAGCTGGTCCGTCCGGTTTAGCTACAGCGGCTTGT 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 61 TGGGTCAACGGTCCGGTTATCGTAGGAGCTGGTCCATCCGGTTTAGCTACAGCAGCTTGT 120
Query 121 CTACGTGATCAAGGAGTCCCATTCGTTGTGGTCGAGAGATCAGATTGCATAGCTTCACTT 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 CTACATGATCAAGGAGTCCCATTCGTTGTGGTCGAGAGATCAGATTGCATAGCGTCACTG 180
Query 181 TGGCAAAAACGAACCTACGACAGGCTTAAGCTTCACTTGCCCAAGAAATTCTGTCAATTG 240
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 181 TGGCAAAAACGAACCTACGATAGGCTCAAGCTTCACTTGCCCAAGAAATTCTGCCAATTA 240
Query 241 CCGACAATGCCCTTCCCGGATCACTACCCTGAATACCCAACGAAACGACAGTTCATCGAT 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCGAAAATGCCCTTCCCGGATCACTACCCTGAATACCCAACGAAACGACAGTTCATCGAT 300
Query 301 TACCTTGAGTCATACGCAAACCGGTTCGAGATTAAACCGGAATTCAATAAAAGCGTCGAG 360
||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||
Sbjct 301 TACCTTGAGTCATACGCAAACCGGTTCGATATTAAACCGGAGTTTAATAAAAGCGTTGAG 360
Query 361 TCTGCTCGGTTTGATGAAACCAGCGGGCTATGGAGGGTTAGAACAACCTCAGCCGGAGAG 420
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 361 TCTGCTCGGTTTGATGAAACTAGCGGGCTATGGAGGGTTAGAACAACCTCAGACGGAGAG 420
Query 421 GAGATGGAATATATTTGCCGGTGGTTGGTGGTGGCGACGGGAGAAAACGCCGAACGTGTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGATGGAATATATTTGCCGGTGGTTGGTGGTGGCGACGGGAGAAAACGCCGAACGTGTT 480
Query 481 GTCCCGGAGATTAATGGGCTTAAGACGGAGTTTGACGGAGAAGTAATTCATGCATGTGAG 540
||||| ||||||||||| |||| ||||||||||||||||||||| ||||| || ||||||
Sbjct 481 GTCCCAGAGATTAATGGTCTTATGACGGAGTTTGACGGAGAAGTGATTCACGCTTGTGAG 540
Query 541 TATAAGTCCGGCGAAAAATTCAGAGGAAAGAGAGTTCTTGTCGTCGGATGTGGAAACTCC 600
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TATAAGTCCGGCGAGAAATTCAGAGGAAAGAGAGTTCTTGTCGTCGGATGTGGAAACTCA 600
Query 601 GGCATGGAAGTCTCTCTTGATCTTGCTAATCACAATGCTATCACTTCCATGGTCGTTAGA 660
||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 601 GGCATGGAAGTCTCTCTTGATCTTGCTAACCACAATGCAATTACTTCCATGGTCGTTAGA 660
Query 661 AGCTCGGTTCATGTTTTACCGAGGGAGATTATGGGGAAATCAACATTTGGAATCTCAGTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGCTCGGTTCATGTTTTACCGAGGGAGATTATGGGGAAATCAACATTTGGAATCTCAGTG 720
Query 721 ATGATGATGAAGTGGCTACCTCTATGGCTCGTAGACAAGCTTCTGCTAATCTTATCGTGG 780
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 721 ATGATGATGAAGTGGCTACCTTTATGGCTCGTAGACAAGCTTCTGCTTATCTTATCGTGG 780
Query 781 CTT-GTTCTAGGGAGCTTATCAAAGTATGGGCTCAAGAGGCCCGACATCGGCCCGATGGA 839
|| |||||||||||||||||||| |||||||| || ||||| ||||||||||| |||||
Sbjct 781 -TTGGTTCTAGGGAGCTTATCAAACTATGGGCTTAAAAGGCCTGACATCGGCCCAATGGA 839
Query 840 GCTCAAAAGCATGACAGGGAAGACGCCGGTTCTTGACATCGGTGCTCTGGAGAAGATAAA 899
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GCTTAAAAGCATGACAGGAAAGACGCCGGTTCTTGACATCGGTGCTCTGGAGAAGATAAA 899
Query 900 ATCCGGCGACGTAGAAATTGTACCTGCAATCAAACAGTTCTCGCGTCACCACGTGGAGCT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 ATCCGGCGACGTAGAAATTGTACCTGCAATCAAACAGTTCTCGCGTCACCACGTGGAGCT 959
Query 960 AGTAGATGGTCAGAAGCTAGGTATCGACGCCGTGGTTCTCGCCACCGGCTATCGTAGCAA 1019
||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||
Sbjct 960 CGTAGATGGTCAGAAGCTAGATATCGACGCTGTGGTTCTCGCCACCGGTTATCGTAGCAA 1019
Query 1020 TGTCCCTTCTTGGCTTCAAGAAAGTGAATTCTTTTCGAAAAACGGGTTTCCGAAATCGCC 1079
||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 1020 CGTCCCTTCTTGGCTTCAGGAAAGTGAGTTCTTTTCGAAAAATGGGTTTCCGAAATCGCC 1079
Query 1080 GTTTCCAAACGCGTGGAAAGGGAAATCGGGATTATACGCGGCCGGATTCACGAGAAAAGG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GTTTCCAAACGCGTGGAAAGGGAAATCGGGATTATACGCGGCCGGATTCACGAGAAAAGG 1139
Query 1140 ATTGGCTGGGGCATCAGTAGACGCCGTTAACATCGCTCAAGACATTGGAAATGTATGGAG 1199
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1140 GTTGGCTGGAGCATCAGTAGACGCCGTTAACATCGCTCAAGACATTGGAAATGTGTGGAG 1199
Query 1200 AGAAGAGACCAAACGACAGAAGATGAGAAGAAATGTGGGTCACCGAAGATGCATCTCAGT 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AGAAGAGACCAAACGACAGAAGATGAGAAGAAATGTGGGTCACCGAAGATGCATCTCAGT 1259
Query 1260 TGCTTAA 1266
|||||||
Sbjct 1260 TGCTTAA 1266
> AT5G43890.1 | Symbols: YUC5, SUPER1 | Flavin-binding monooxygenase
family protein | chr5:17648857-17650131 REVERSE LENGTH=1275
Length=1275
Score = 976 bits (528), Expect = 0.0
Identities = 1047/1294 (81%), Gaps = 49/1294 (4%)
Strand=Plus/Plus
Query 1 ATGGAAAATATGTTTAGACTCATGGCAAGTGAAGAATATTTCTCAGACCG--G-CGATGT 57
||||| || |||||||| ||||||| |||||||| ||| ||| ||| | | || ||
Sbjct 1 ATGGAGAACATGTTTAGGCTCATGGGAAGTGAAG---ATTCCTCCGACAGAAGACGGTGC 57
Query 58 GTTTGGGTCAACGGTCCGGTTATCGTAGGAGCTGGTCCGTCCGGTTTAGCTACAGCGGCT 117
||||||| |||||||| || ||||| ||||| || || || || |||| || || ||
Sbjct 58 ATTTGGGTTAACGGTCCTGTAATCGTCGGAGCCGGGCCATCGGGGCTAGCCACGGCAGCC 117
Query 118 TGTCTACGTGATCAAGGAG-TCCCATTCGTTGTGGTCGAGAGATCAGATTGCATAGCTTC 176
|| || || || |||| | |||| || || || | |||||| ||||||||||||||||
Sbjct 118 TGCCTCCGCGAGGAAGGTGTTCCC-TTTGTGGTATTGGAGAGAGCAGATTGCATAGCTTC 176
Query 177 ACTTTGGCAAAAACGAACCTACGACAGGCTTAAGCTTCACTTGCCCAAGAAA-TTCTGTC 235
||| |||||||||||||| ||||| || | || ||||| || || |||||| || ||||
Sbjct 177 ACTATGGCAAAAACGAACTTACGATAGAATCAAACTTCATTTACCAAAGAAAGTT-TGTC 235
Query 236 AATTGCCGACAATGCCCTTCCCGGATCACTACCCTGAATACCCAACGAAACGACAGTTCA 295
|||| || | ||||||||||||||| ||||||| ||||| ||||| |||||||||||||
Sbjct 236 AATTACCCAAAATGCCCTTCCCGGAAGACTACCCGGAATATCCAACAAAACGACAGTTCA 295
Query 296 TCGATTACCTTGAGTCATACGCAAACCGGTTCGAGATTAAACCGGAATTCAATAAAAGCG 355
|||| ||||||||||| ||||||||| ||||| |||| || | ||||| | | |
Sbjct 296 TCGAGTACCTTGAGTCCTACGCAAACAAATTCGAAATTACTCCTCAGTTCAACGAGTGTG 355
Query 356 TCGAGTCTGCTCGGTTTGATGAAACCAGCGGGCTATGGAGGGT-TAG--AACA---ACCT 409
|| |||||||||| | || || || || || || ||| | | || |||| |||
Sbjct 356 TCCAGTCTGCTCGATACGACGAGACAAGTGGTCTCTGGCGCATCAAGACAACATCTTCCT 415
Query 410 C-AGC-CGGAG-AGGAGATGGAATATATTTGCCGGTGGTTGGTGGTGGCGACGGGAGAAA 466
| | ||| | ||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 416 CTTCCTCGGGGTCGGAGATGGAATATATCTGCCGGTGGTTAGTGGTGGCGACGGGAGAAA 475
Query 467 ACGCCGA-ACGTGTTGTCCCGGAGATTAATGGGCTTA-AGACGGAGTTTGACGGAGAAGT 524
|||| || | ||||| || ||||| ||||||| | | ||||||||||| || || ||
Sbjct 476 ACGCGGAGA-AAGTTGTTCCAGAGATCGATGGGCTCACA-ACGGAGTTTGAAGGCGAGGT 533
Query 525 AATTCA-TGCATGTGAGTATAAGTCCGGCGAAAAATTCAGAGGAAAGAGAGTTCTTGTCG 583
|| || | | |||||||| || |||||||| |||| |||||||||||| ||||||||||
Sbjct 534 GATCCACT-CGTGTGAGTACAAATCCGGCGAGAAATACAGAGGAAAGAGTGTTCTTGTCG 592
Query 584 TCGGATGTGGAAACTCCGGCATGGAAGTCTCTCTTGATCTTGCTAATCACAATGCTA-T- 641
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
Sbjct 593 TCGGATGTGGAAACTCCGGCATGGAAGTCTCTCTTGATCTCGCAAATCACAATGCTAATG 652
Query 642 CACTTCCATGGTCGTTAGAAGCTCGGTTCATGTTTTACCGAGGGAGATTATGGGGAAATC 701
|| | ||||||| ||| | |||||||||||||| ||||| || |||||| | || |||||
Sbjct 653 CA-T-CCATGGTTGTTCGTAGCTCGGTTCATGTGTTACCAAGAGAGATTTTAGGCAAATC 710
Query 702 AACATTTGGAATCTC-AGTGATGATGATGAAGTGGCTACCTCTATGGCTCGTAGACAAGC 760
| |||| |||||| | ||||| ||||||||||| | ||||| ||||| |||||||||
Sbjct 711 TAGTTTTGAAATCTCCA-TGATGTTGATGAAGTGGTTTCCTCTGTGGCTAGTAGACAAGA 769
Query 761 TTCTGCTAAT-CTTATCGTGGCTTG-TTCTAGGGAGCTT-ATCAAAGTATGGGCTCAAGA 817
|||| || || ||| | ||||| | || |||| | || | |||||||||| || ||||
Sbjct 770 TTCTACTGATTCTTG-CATGGCT-GATTTTAGGAAATTTGA-CAAAGTATGGCCTAAAGA 826
Query 818 GGCCCGAC-ATCGGCCCGATGGAGCTCAAAAGCATGACAGGGAAGACGCCGGTTCTTGAC 876
||||| || || ||||| ||||||||||| | | |||| ||||| || ||||| |||
Sbjct 827 GGCCC-ACGATGGGCCCAATGGAGCTCAAGATTGTTTCAGGTAAGACTCCAGTTCTAGAC 885
Query 877 ATCGGTGCTCTGGAGAAGATAAAATCCGGCGACGTAGAAATTGTACCTGCAATCAAACAG 936
||||| ||| ||||||| || |||||||| || |||||||| || || | ||| |||| |
Sbjct 886 ATCGGAGCTATGGAGAAAATCAAATCCGGTGAAGTAGAAATCGTCCCGGGAATTAAACGG 945
Query 937 TTCTCGCGTCAC-CACGTGGAGCTAGTAGATGGTCAGAAGCT-AGGTATCGACGCCGTGG 994
||||| ||| | ||||||||||||||||| ||||||| | | || | |||| || ||||
Sbjct 946 TTCTCTCGT-AGTCACGTGGAGCTAGTAGACGGTCAGA-GATTAGATCTCGATGCGGTGG 1003
Query 995 TTCTCGCCACCGGCTATCGTAGCAATGTCCCTTCTTGGCTTCAAGAAAGTGAAT-TCTTT 1053
|||| ||||| || || |||||||| ||||| || ||||| ||||||| ||| | | |||
Sbjct 1004 TTCTGGCCACGGGTTACCGTAGCAACGTCCCATCATGGCTCCAAGAAAATGA-TCTGTTT 1062
Query 1054 TCGAAAAACGGGTTTCCGAAATCGCCGTTTCCAAACGCGTGGAAAGGGAAATCGGGA-TT 1112
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1063 TCGAAAAACGGGTTCCCGAAATCGCCGTTTCCAAACGCGTGGAAAGGGAAATCGGGACTT 1122
Query 1113 ATACGCGGCCGGATTCACGAGAAAAGGATTGGCTGGGGCATCAGTAGACGCCGTTAACAT 1172
|||||||| |||||||| || |||||||||||||| ||||||| |||||||||||||||
Sbjct 1123 -TACGCGGCTGGATTCACAAGGAAAGGATTGGCTGGAGCATCAGCAGACGCCGTTAACAT 1181
Query 1173 CGCTCAAGACATTGGAAATGTATGGAGAGAAGAGACCAAACGACAGAAGATGAGAAGAA- 1231
||||||||| |||||||| || ||||||||||| |||||||||||||| ||||||| |
Sbjct 1182 CGCTCAAGATATTGGAAACGTGTGGAGAGAAGAAACCAAACGACAGAAAATGAGAACACG 1241
Query 1232 ATGTGGGTCACCGAAGATGCATCTCAGTTGCTTA 1265
| ||||||||||| |||||||| |||||||||||
Sbjct 1242 A-GTGGGTCACCGCAGATGCATTTCAGTTGCTTA 1274
> AT5G25620.2 | Symbols: YUC6 | Flavin-binding monooxygenase family
protein | chr5:8935040-8938758 REVERSE LENGTH=2111
Length=2111
Score = 80.5 bits (43), Expect = 4e-14
Identities = 416/590 (71%), Gaps = 50/590 (8%)
Strand=Plus/Plus
Query 64 GTCAACGGTCCGGTTATCGTAGGAGCTGGTCCGTCCGGTTTAGCTACAGCGGCTTGTCTA 123
|||| ||||||||| |||||||| || || ||||| || |||| || || || ||| ||
Sbjct 619 GTCACCGGTCCGGTGATCGTAGGCGCCGGACCGTCGGGACTAGCCACGGCAGCATGTTTA 678
Query 124 CGTGATCA-AGG-AGTCCCATTCGTTGTGGTCGAGAGATCAGATTGCATAGCTTCACTTT 181
|| | ||| | || | | ||| | | ||||||||| | || ||||| ||||| |
Sbjct 679 AAAGA-GAGAGGTA-TCACGTCCGTACTACTAGAGAGATCAAACTGTATAGCATCACTAT 736
Query 182 GGCAAAAACGA-ACCTACGACAGGCTTAAGCTTCA-CTTGCCCAAGA-AATTCTGTCAA- 237
||| | | | || || ||| | ||| | ||||| ||| || || | |||||||| ||
Sbjct 737 GGC-AGCTCAAGACTTATGACCGTCTTCATCTTCACCTT-CCTAA-ACAATTCTGTGAAC 793
Query 238 TTGCCGACAATGCCCTT-CCCGGATCACTACCCTGA-ATACCCAACGAAACGACAGTTCA 295
|| |||| || ||||| |||||| | | |||| | ||||| ||||| | ||||||||
Sbjct 794 TT-CCGATTATACCCTTCCCCGGA-GATTTCCCT-ACCTACCCGACGAAGCAACAGTTCA 850
Query 296 TCGATTACCTTGA-GTCATACGCAAACCGGTTCGAGATTAAA-CCGGAATTCAA-TAAAA 352
|||| |||||||| | | ||||| |||| || | |||| ||||| || || |||
Sbjct 851 TCGAGTACCTTGAGGAC-TACGCTCGGAGGTTTGACA-TAAAGCCGGAGTTTAACCAAAC 908
Query 353 GCGTCGAGTCTGCTCG-GTTTGATG-AAACCAGCGGGCTATGGAGGGTTAGAAC-AACCT 409
| || ||||| ||| | |||||||| ||||| ||| | ||| | | | | || | | |
Sbjct 909 G-GTTGAGTCGGCT-GCGTTTGATGAAAACC-TTGGGATGTGGCGCG-T-G-ACTAGCGT 962
Query 410 CAGCCGGAG-AGG-A-GATGGAATATATTTGCCGGTGGTTGGTGGTGGCGACGGGAGAAA 466
| | || ||| | || ||| ||| |||| |||||||| |||| ||||||||| || |
Sbjct 963 -GGGAGAAGAAGGCACGACGGAGTATGTTTGTCGGTGGTTAGTGGCGGCGACGGGGGAGA 1021
Query 467 ACGCCGA-ACGTGTTGT-CCCGGAGATTAATGGGCT---TAAG-ACGGAGTTTGACGGAG 520
| || || || || || || | | || | ||| | |||| | || | ||| |
Sbjct 1022 ATGCGGAGCCG-GTGGTACCTAG-GTTTGAGGGGATGGATAAGTTTGCAG-CCGCCGGGG 1078
Query 521 AAG-TAATTCATGCATGTGAGTATAAGTCCGGCGAAAAATTCAG-AGGAAAGAGAGTTCT 578
|| ||| || | ||| | ||||| |||| | | | ||| | ||||| || |||||
Sbjct 1079 TAGTTAA-GCACACGTGTCATTATAAAACCGGTGGAGATTTC-GCCGGAAAAAGGGTTCT 1136
Query 579 TGTCGTCGGATGTGGAAACTCCGGCATGGAAGTCTCTCTTG-ATCT-TGC 626
|||||||||||||||||||||||| ||||| || | | ||| |||| |||
Sbjct 1137 TGTCGTCGGATGTGGAAACTCCGGTATGGAGGTTTGT-TTGGATCTCTGC 1185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62248675800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5