BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311525
Length=2937
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04390.1 | Symbols: | BTB/POZ domain-containing protein | c... 1341 0.0
> AT1G04390.1 | Symbols: | BTB/POZ domain-containing protein |
chr1:1179363-1183704 REVERSE LENGTH=2954
Length=2954
Score = 1341 bits (726), Expect = 0.0
Identities = 815/858 (95%), Gaps = 6/858 (1%)
Strand=Plus/Plus
Query 1 ATGGCATCGTCAAAGGGAGGAAACACCACCGCCCACATCAATACTCTTCACCATCGTCTT 60
||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 90 ATGGCGTCGTCAAAGGGAGGAAACACCACTGCCCACATCAATACTCTTCACCACCGTCTT 149
Query 61 TATCACGCTCTCAATCTTGGCTTCAGGGTATGTGATGAGAAAGAGAAGAAGTGGAAGTGT 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 150 TATCACGCTCTCAATCTTGGCTTCAGGGTTTGTGATGAGAAAGAGAAGAAGTGGAAGTGT 209
Query 121 ACTGATATCGAGATACAGAGACATGTCGTGAAGTCGATTTCAGCTTTTCTTGATTGTTTT 180
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 210 ACTGATATTGAGATACAGAGACATGTCGTGAAGTCGATTTCAGCTTTCCTTGATTGTTTT 269
Query 181 TCTCGAGCAACAGCTAACAATCGTCTTATCAAGGATTCAATTTCTGATATAGCCGGGGCC 240
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 TCTCGTGCAACAGCTAACAATCGTCTTATCAAGGATTCAATTTCTGATATAGCCGGGGCT 329
Query 241 TTGGTGTTTATTCTAGGGTGTAAAAACAGAGCAGTGGTTGGTTTAGCAGCCAATGTAGTT 300
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 330 TTGGTGTTTATTCTAGGGAGTAAAAACAGAGCAGTGGTTGGTTTGGCAGCCAATGTAGTT 389
Query 301 ATTAGGTTGATCCGTATTGTTCCTCCTTCTATTTTGCATTCATATTCTTTGGATCTCGTG 360
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 390 ATTAGGTTGATTCGTATTGTTCCTCCTTCTATCTTGCATTCATATTCTTTGGATCTCGTG 449
Query 361 GAGTCTTTATCACCTTTGTTAAGTTGTCAACAATTCGATGTTTCGCTTCCCTGTGCCGTT 420
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 450 GAGTCTTTATCACCTCTGTTATGTTGTCAACAATTCGATGTTTCGCTTCCCTGTGCCGTT 509
Query 421 GCTTTGAACGCTATTCTTGTAAACGTAAGAGAAACGAAGGAGAAAGATGTGTGGAAGATT 480
|||||||||||||||||||| ||||| |||||||| ||||| ||||| ||||||||||||
Sbjct 510 GCTTTGAACGCTATTCTTGTGAACGTGAGAGAAACTAAGGAAAAAGAAGTGTGGAAGATT 569
Query 481 TTAGAAGACGCA-AAAACTGTGGTTTCCGTTGTTGGTAATCTGCAGAAT-TTTT-TGGAG 537
||||| || | | |||||||||||||| |||||||||||| ||||| || |||| | |||
Sbjct 570 TTAGAGGATG-AGAAAACTGTGGTTTCTGTTGTTGGTAATTTGCAG-ATCTTTTCT-GAG 626
Query 538 GGGAGTATGTCAGTGGAATGGTTTCAAGAGATGGCTTTGCTTCTGAGTACAATTATGTTG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 GGGAGTATGTCAGTGGAATGGTTTCAAGAGATGGCTTTGCTTCTGAGTACAATTATGTTG 686
Query 598 AAGTGGCCTCGGTCAAGGTATTCTGTTTGGCACAACCCTGCCTTGATGGGTATATTGGAG 657
|||||||||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 687 AAGTGGCCTCAGTCTAGGTATTCTGTTTGGAACAACCCTGCCTTGATGGGTGTATTGGAG 746
Query 658 AGTGTTAGTCAGAAGCCTGATATGGGTTTGAGAGTTGCAACTTTGAAGCTGTATTCTTCT 717
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 747 AGTGTTAGTCAGAAGCCTGATATGGGTTTGACAGTTGCAACTTTGAAGCTCTATTCTTCT 806
Query 718 CTAGCTCTGTGTGGACATGGTGCCAATGCGCTTCTAGACAATGGGAAGCCTATGTTAGAT 777
|||||||| ||||| ||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 807 CTAGCTCTTTGTGGCCATGGTGCCAATGAGCTTTTAGACAATGGGAAGCCTATGTTAGAT 866
Query 778 ATGATGATTAGCTGCATGGGGGAATCAAGCTCTCAAACTGCTCGAATTGAAGGGTTAAAG 837
||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||
Sbjct 867 ATGATGATTAGCTGCATGGAGGAGTCAAGCTCTCAAAATGCTCGAATTGAAGGGTTAAAG 926
Query 838 CTAGCGCAAAGGCTTGCG 855
||||| ||||||||||||
Sbjct 927 CTAGCACAAAGGCTTGCG 944
Score = 1243 bits (673), Expect = 0.0
Identities = 771/819 (94%), Gaps = 4/819 (0%)
Strand=Plus/Plus
Query 1601 GCTGGTATCAAAGGAATTGGAAAAATATTGGAGCATCAAGTTTTGCTCCTTCTCCCCAGA 1660
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1288 GCTGGTATCAAAGGAATTGGGAAAATATTGGAGCATCAAGTTTTGCTCCTTCTTCCCAGA 1347
Query 1661 GCACCTCTGAAAAGAGGATATGTTGTTGGGTATGTACGGAAGACTGGGACAACAAAGATG 1720
||| | |||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1348 GCATCACTGAAAAGAGGATATGCTGCTGGGTATGTACGGAAGACTGGGACAACAAAGATG 1407
Query 1721 CTTTTCTTCTATACTCTCTGTTGGCTTTGGCTGAGTTGGTAAATCATTCATTCTCTGAAC 1780
| |||||||||||| |||| ||||||||||| |||||||||||||||||||||| || ||
Sbjct 1408 CCTTTCTTCTATACGCTCTCTTGGCTTTGGCCGAGTTGGTAAATCATTCATTCTTTGGAC 1467
Query 1781 AGAATCACGCT-ATAGAACTTTCAGTGAAGAGCGAAAATTTGAAAGATCGGTTATGCACC 1839
||||||||||| | |||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1468 AGAATCACGCTGA-AGAACTTTCAATGAAGAGCGGAAATTTGAAAGATCGGTTATGCACC 1526
Query 1840 ACACTTAAGGAGATCCGAGATGAAACTTATGGCTCTGGTCCAAGGTGGTATGCTGCACAC 1899
||||||||||| ||||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1527 ACACTTAAGGAAATCCGCGATGGAACATATGGCTCTGGTCCAAGGTGGTATGCTGCACAC 1586
Query 1900 ATCCTAAGCTATCTTGGATACTATGGCTTCCAACATAAGTTGGGGAAAAGGCTCATGGGA 1959
|||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| |
Sbjct 1587 ATCCTAAGCTATTTTGGATACTACGGCTTCGAACATAAGTTGGGGAAAAGGCTCATGTGT 1646
Query 1960 GCTTATGAAGATGAGGAATTTAGTGATATGCGACTCGTTTTTGCTAGTGGGAATAGTGCG 2019
||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||
Sbjct 1647 GCTTATGAAGATGAGGAATATAGTGATATGCGACTCCTTTTTGCTAGTGGAAATAGTGCG 1706
Query 2020 AGTGTAAACAAAGTTATTATTG-GTGTCAGTTGTCCAATGTTGCTGCCTCCCAAGGAAGG 2078
|||||||||||||||||||| | | ||||| ||||||||| | |||||||||||||||||
Sbjct 1707 AGTGTAAACAAAGTTATTATCGCG-GTCAGGTGTCCAATGCTACTGCCTCCCAAGGAAGG 1765
Query 2079 AGCTCACAGTGGCTCGACTATATTAACTGAGAAATCTCAGAGAACCGTTCAAGAAATCCG 2138
|||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1766 AGCTCACAGTAGCTCAACTATATCAACTGAGAAATCTCAGAGAACCGTTCAAGAAATCCG 1825
Query 2139 CATGTCTGCCAATGTGGATACTTTGGCGCTTGTTAAATTATTGGAATTTGCTTACTCCGG 2198
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||
Sbjct 1826 CATGTCTGCCAATGTGGATATTTTGGCACTTGTTAAATTATTGGAATTTGCTTACTCTGG 1885
Query 2199 GTATGTGGAAGTAGAAAGCACGACTCTGAAAAAGCTGAAAACTTTGGCGAGACATTGTAA 2258
||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||
Sbjct 1886 TTATGTGGAAGTAGAAAGCACGACACTGAAAAAGCTGAAACCTTTGGCGAAACATTGTAA 1945
Query 2259 GGCAAAGGTTCTGCTGCAGATGCTCAGCAGAAGAAGACCCAAGTGGGGATCTTCAATACC 2318
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1946 GGCAAAGGTTCTGCTGCAGATGCTCTGCAGAAGAAGACCCAAGTGGGGATCTTCAATACC 2005
Query 2319 CGTAATTGATTTACCCCTTGCCCTCACTCCTAAACTCATCCACTTCTCGGATGTGATATT 2378
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2006 CGAAATTGATATACCCCTTGCCCTCACTCCTAAACTCATCCACTTCTCGGATGTGATATT 2065
Query 2379 AGTACCTAAAGAAACAAACGTGGCTGGCTTCAACTGCCG 2417
||||||||||||||||||||||||| |||||||||||||
Sbjct 2066 AGTACCTAAAGAAACAAACGTGGCTTGCTTCAACTGCCG 2104
Score = 769 bits (416), Expect = 0.0
Identities = 444/457 (97%), Gaps = 3/457 (1%)
Strand=Plus/Plus
Query 2484 CCATTTGGATAGACTAAACGTTCCTGTGAGCTGGCTGGGGTTAACAAAACTTGTGAGTTG 2543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2207 CCATTTGGATAGACTAAACGTTCCTGTGAGCTGGCTGGGGTTAACAAAACTTGTGAGTTG 2266
Query 2544 GTTCTACTCTGATGAGTTGCCAAACCCTCCATCGGGTTGCAAGTGGAACAACATGGACAC 2603
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2267 GTTCTACTCTGATGAGTTGCCAAAGCCTCCATCGGGTTGCAAGTGGAACAACATGGACAC 2326
Query 2604 TGAGGCAAAACTGGATGAGCTTCAAGCTTATGTGGAGATATACTCGCTTTCTGAATGGTG 2663
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2327 TGAGGCAAAGCTGGATGAGCTTCAAGCTTATGTGGAGATATACTCGCTTTCTGAATGGTG 2386
Query 2664 GATTATGGAAGATCTTCAAAACGATTGCGCTCATGTGATTCTCTGTTGCTTGGAATCCGC 2723
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2387 GATTATGGAAGAACTTCAAAACGATTGCGCTCATGTGATTCTCTCTTGCTTGGAATCCGC 2446
Query 2724 TAGAGAGTTATCTATCAAAACAATTGAATTAGCTGCAAGTTTCTCGATGTGGAAACTGGT 2783
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 2447 TAGAGAGTTATCTATCAAAACAATCGAATTAGCTGCGAGTTTCTCGATGTGGAAACTGGT 2506
Query 2784 GGAAGCTGCTGCTAATCATGCAGCTCCTATATATCATCAGCTTCGTGACTCGGGTGAGCT 2843
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 2507 GGAAGCTGCTGCTAATCATGCAGCTCCTATTTATCATCAGCTTCGTGACTCAGGTGAGCT 2566
Query 2844 CGATGAGCTAGACGACGAGCTGGTAAACTTGATCCGAACCGCCGCTGTTCAGTTCTCTCA 2903
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2567 CGATGAGCTAGACGACGAGCTGGTAAACTTGATCCGAACCGCCGCTGTTCAGTTTTCTCA 2626
Query 2904 ACAGGGTGGTTAAAT---CAACAGAAGCAAAAGCTAA 2937
||||||||||||||| ||||||||||||||| |||
Sbjct 2627 ACAGGGTGGTTAAATTATCAACAGAAGCAAAAGTTAA 2663
Score = 412 bits (223), Expect = 7e-114
Identities = 237/244 (97%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 912 GGCTACCATTCAGACCATGGGTAAGTGGTTTTTGAGCTCAGGAAAGCTTGAACATGACCA 971
||||||| ||| |||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 944 GGCTACCGTTCGGACCATGGGTAAGTGGTTCTTGAGCTCAGGAAAGCTTGAACTTGACCA 1003
Query 972 GATGTCTTTGCTTGTGGAGGCTTGTAAACTGGCTCTAATCACTCGTTGGGAAGGAAAACA 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1004 GATGTCTTTGCTTGTGGAGGCTTGTAAACTGGCTCTAATCACTCGTTGGGAAGGACAACA 1063
Query 1032 TCATATTTATTTCTGGAAGTATCGGATCTCTGAAGCGCTTCTTAGTCTTGTTGTGGAGAA 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 TCATATTTATTTCTGGAAGTATCGGATCTCTGAAGCGCTTCTTAGTCTTGTTGTGGAGAA 1123
Query 1092 CTTTCATAGTCAATCCTTGGATGGTTATGTGTCTCTGGAAGAAGAAATTTTAGTTGCTGA 1151
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1124 CTTTCATAGTCAATCCTTGGATGGTTATGTATCTCTGGAAGAAGAAGTTTTAGTTGCTGA 1183
Query 1152 GAAG 1155
||||
Sbjct 1184 GAAG 1187
Score = 174 bits (94), Expect = 4e-42
Identities = 100/103 (97%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1369 AGCGAGTCAGCATCAAGAGCAGTGCTAATGATGATATATTCTCCCTCCAAATACATATCA 1428
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1186 AGCGAGTCAGCATCAAGAGCAGTGCTAATGATGATATGTTCTCCCTCCAAATACATATCA 1245
Query 1429 TCGAGGGCCAGAGTTACCCTGTCATTCATCCTAGAAGAAGGTG 1471
||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1246 TCGAGGGCCCGAGTTACCCTGTCATTTATCCTAGAAGAAGGTG 1288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145985804130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5