BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311551
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04640.1 | Symbols: LIP2 | lipoyltransferase 2 | chr1:129208... 1195 0.0
AT1G04635.1 | Symbols: EMB1687 | ribonuclease P family protein ... 479 2e-134
> AT1G04640.1 | Symbols: LIP2 | lipoyltransferase 2 | chr1:1292080-1293357
FORWARD LENGTH=896
Length=896
Score = 1195 bits (647), Expect = 0.0
Identities = 691/713 (97%), Gaps = 0/713 (0%)
Strand=Plus/Plus
Query 290 CGGAAATGAGATCCCCTAGAACCTTGGAGGTTTGGAAGCTAGGCACTGTCAACTATTTGA 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CGGAAATGAGATCCCCTAGAACCTTGGAGGTTTGGAAGCTAGGCACTGTCAACTATTTGA 134
Query 350 AATCCCTTAAACTGCAAGAGAAATTAGTTTCAGAGAGAAAAGCTCATCATATTCCAGATA 409
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 135 AATCCCTTAAACTGCAGGAGAAATTAGTTTCAGAGAGAAAAGCTCATCAGATTCCAGATA 194
Query 410 CCCTCCTCTCGCTTCAGCATCCACCAACTTATACGCTCGGAAAGCGTAGAACCGATCACA 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 CCCTCCTCTCGCTTCAGCATCCACCAACTTATACGCTCGGAAAGCGTAGAACCGATCACA 254
Query 470 ATCTACTGATCCCTGAATCTGAACTTACAAAAATTGGAGCTGAACTTCATTATACTCAAA 529
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 255 ATCTACTTATCCCTGAATCTGAACTTACAAAAATCGGAGCTGAACTTCATTATACTCAAA 314
Query 530 GAGGAGGAGACATCACCTTCCATGGCCCTCATCAAGCCATCTTATATCCCATCATTTCTT 589
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 315 GAGGAGGAGACATCACCTTCCATGGCCCTCATCAAGCCATCTTATATCCCATCATTTCCT 374
Query 590 TACGCAGCATCGGTTTTGGTGCTAGGAACTATGTGGAGACATTGGAGAGGTCAATGATCG 649
|||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 375 TACGCAGCATTGGTTTTGGTGCTAGGAACTACGTGGAGACATTGGAGCGGTCAATGATCG 434
Query 650 AATTTGCTTCGATTTATGGCGTGAAAGCTCGTGCAGGAAACAAATGTGAGACTGGGGTTT 709
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 435 AGTTTGCTTCGATTTATGGCGTGAAAGCTCGAGCAGGAAACAAATGTGAGACTGGGGTTT 494
Query 710 GGGTTGGGGATAGGAAGATCGGTGCTATTGGGGTTCGGATATCTTCTGGAATAACTAGTC 769
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 495 GGGTTGGGGATAGGAAGATCGGTGCTATTGGGGTTAGGATATCTTCTGGAATCACTAGTC 554
Query 770 ATGGTTTGGCCTTTAACATAGATCCTGATTTGAAGTACTTTGAGCACATTGTGCCTTGTG 829
||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 555 ATGGTTTGGCCTTAAATATAGATCCTGATATGAAGTACTTTGAGCACATTGTGCCTTGTG 614
Query 830 GGATTGCTGATAAAGAAGTTACATCTTTGCGAAGAGAGACAGACACTCTGCTTCCTTCAG 889
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 615 GGATTGCTGATAAAGAAGTTACATCTTTGCGAAGAGAGACGGATACTCTGCTTCCTTCAG 674
Query 890 AAGAAGTGATTCATGAACAGTTGGTTTCTTGTTTAGCCAAAGCTTTTTCTTATGATGATG 949
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 675 AAGAAGTGATTCATGAACAGTTGGTTTCTTGTTTAGCCAAAGCGTTTTCTTATGATGATG 734
Query 950 TTGTGTGGAAGGAAGATCCTTCAGTCATTTTGGACACCCAAGCTGAAGAATAA 1002
|||| |||||||||||||||||| |||||||||||||||||| | ||||||||
Sbjct 735 TTGTCTGGAAGGAAGATCCTTCACTCATTTTGGACACCCAAGATAAAGAATAA 787
> AT1G04635.1 | Symbols: EMB1687 | ribonuclease P family protein
/ Rpp14 family protein | chr1:1291314-1291995 FORWARD LENGTH=682
Length=682
Score = 479 bits (259), Expect = 2e-134
Identities = 281/292 (96%), Gaps = 0/292 (0%)
Strand=Plus/Plus
Query 1 ATGGTGGGATTTAAGAACAGATACATGTTAATGGAAGTTTTTCTGGATCCGGAAAAAGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 37 ATGGTGGGATTTAAGAACAGATACATGTTAATGGAAGTTTTTCTGGATCCGGACAAGGAT 96
Query 61 CTTCTCGGGGAAGGAACTCCGATCATTCTTACACAATTCAATCTCTCGAAAGCAATCAAA 120
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 97 CTTCTCGGAGAAGGAACACCGATCATTCTTACACAATTCAATCTCTCGAAAGCAATCAAA 156
Query 121 GACAGTATCCTCGTCAATTTCGGCGAGTGTGGTCTAGGTTCGTCTCTCGGTTCCTTCCAG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 GACAGTATCCTCGTCAATTTCGGCGAGTGTGGTCTAGGTTCGTCTCTCGGTTCCTTCCAA 216
Query 181 GTGAAATATGTGAATCCAATCACAAAGCTATGCATTGTAAGATCATCAAGAGAGGAACAC 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 217 GTGAAATATGTGAATCCAATCACGAAGCTATGCATTGTAAGATCATCAAGAGAAGAACAC 276
Query 241 AGACAAGTTTGGTCGGCAATCACGTTGGTTAAAAGCATCGGAAACTGTCCGG 292
||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 277 AGACAAGTTTGGTTAGCAATCACATTGGTCAAAAGCATCGGAAACTGTCCGG 328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49078761619
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5