BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311569
Length=1995
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04840.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3022 0.0
> AT1G04840.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:1362867-1364962 REVERSE LENGTH=1998
Length=1998
Score = 3022 bits (1636), Expect = 0.0
Identities = 1883/2003 (94%), Gaps = 13/2003 (1%)
Strand=Plus/Plus
Query 1 ATGAAATCGCTTTATGTTCTTTTTAAACCGAAATCTTCGCCCGCCAAAATATATTTTCCG 60
||||||||||||| |||| ||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 1 ATGAAATCGCTTTCTGTTATTTTTAAACCGAAATCTTCTCCCGCTAAAATCTATTTTCCG 60
Query 61 GCCGATCGTCGAGCCTCACCGGACGAGTCTCACTTCATATCTCTGATTCACACCTGCAAA 120
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 61 GCCGATCGTCAAGCCTCACCGGACGAGTCTCACTTCATATCTCTGATTCACGCCTGTAAA 120
Query 121 GACACCGTAAGCCTCCGCCTTGTTCACGCCCATATCCTCCGTCGCGGCGTCCTCAGTAGC 180
||||||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GACACCGCAAGTCTCCGCCATGTTCACGCCCAGATCCTCCGTCGCGGCGTCCTCAGTAGC 180
Query 181 CGCGTCGCTGCTCAGCTGGTATCTTGCTCTTCGCTTCTCAAGTCCCCAGATTATAGCCTC 240
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 CGCGTCGCTGCTCAGCTCGTATCTTGCTCTTCGCTTCTCAAGTCCCCGGATTATAGCCTC 240
Query 241 TCGATTTTCAGAAATTCTGAAGAGAGGAATCCTTTTGTTTTCAATGCTTTGATCCGTGGT 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 TCGATTTTCAGAAATTCTGAAGAGAGGAATCCTTTTGTTTTAAATGCTTTGATCCGTGGT 300
Query 301 TTGACGGAGAATGCTCGTTTCGAGTGTTCGGTTCGTCATTTCATTCTCATGTTAACGCTT 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 301 TTGACGGAGAATGCTCGTTTCGAGTCTTCGGTTCGTCATTTCATTCTCATGTTAAGGCTT 360
Query 361 GGTGTGAAACCCGATCGGCTAACTTTTCCGTTTGTACTCAAGTCTAATTCGATATTAGGG 420
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 361 GGTGTGAAACCCGATCGGCTAACTTTTCCGTTTGTACTCAAGTCTAATTCTAAATTAGGT 420
Query 421 TTTAGATGGTTGGGTAGAGCTCTTCATGCCGCGACTTTGAAGAATTTCGTTGACTGTGAT 480
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTTAGATGGTTGGGTAGGGCTCTTCATGCCGCGACTTTGAAGAATTTCGTTGACTGTGAC 480
Query 481 TCCTTCGTCAGGGTATCCTTGGTTGATATGTACGCCAAGACCGGACAATTAAATCATGCC 540
|||||||||||| |||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 481 TCCTTCGTCAGGTTATCATTGGTTGATATGTACGCCAAAACCGGACAATTAAAACATGCC 540
Query 541 TTCCAAGTGTTCGAAGAAACTCCTGATAGAATCAAGAAGGAGAGTATTTTGCTATGGAAT 600
||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||
Sbjct 541 TTCCAAGTGTTCGAAGAAAGTCCTGATAGAATCAAAAAGGAGAGTATTTTGATATGGAAT 600
Query 601 GTTTTGGTTAATGGGTATTGTCGAGCCAAGGATATGCAAATGGCTACAACACTTTTTCGG 660
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 601 GTTTTGATTAATGGGTATTGTCGAGCCAAGGATATGCATATGGCTACAACACTTTTTCGA 660
Query 661 TCCATGCCTGAGAGAAATTCAGGATCTTGGAGTACTCTGATTAAGGGTTATGTTGATAAC 720
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
Sbjct 661 TCCATGCCTGAGAGAAATTCAGGATCTTGGAGTACTTTGATCAAGGGTTATGTTGATAGC 720
Query 721 GGCGAGTTGAACAGAGCCAAGCAGCTTTTTGAATTAATGCCAGAGAAAAATGTGGTGTCT 780
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGCGAGTTGAACAGAGCAAAGCAGCTTTTTGAATTAATGCCAGAGAAAAATGTGGTGTCT 780
Query 781 TGGACAACATTAATTAATGGGTTTTCTCAAACTGGCGACTATGAAACTGCCATTTCTACC 840
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 TGGACAACATTAATTAATGGGTTTTCTCAAACTGGCGACTATGAAACTGCGATTTCTACC 840
Query 841 TATTTTGAGATGCTAGAGAAGGGCTTGAAGCCTAATGAATACACAGTTGCTGCTGTGCTC 900
||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 841 TATTTCGAGATGCTAGAGAAGGGCTTAAAGCCTAATGAATACACAATTGCTGCTGTGCTC 900
Query 901 TCTGCATGCTCAAAATCTGGTGCTCTTGGATCAGGAATAAGAATTCATGGTTATATTTTG 960
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCTGCATGTTCAAAATCTGGTGCTCTTGGATCAGGAATAAGAATTCATGGTTATATTTTG 960
Query 961 GACAATGGGATTAAGTTGGATAGAGCTATAGGGACATCTCTCTTAGACATGTACGCAAAA 1020
|||||||||||||||||||||||||| ||||||||| ||||| |||||||||| ||||||
Sbjct 961 GACAATGGGATTAAGTTGGATAGAGCCATAGGGACAGCTCTCGTAGACATGTATGCAAAA 1020
Query 1021 TGTGGGGAAGTCGACTGTGCGGCTACTGTGTTCAGTAATATGAACCATAAGGATATTCTT 1080
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TGTGGGGAACTTGACTGTGCGGCTACTGTGTTCAGTAATATGAACCATAAGGATATTCTT 1080
Query 1081 TCTTGGACTGCTATGATACAAGGTTGGGCGGTTCATGGACGCTTTCATCAGGCTATCCAA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TCTTGGACTGCTATGATACAAGGTTGGGCGGTTCATGGACGCTTTCATCAGGCTATCCAA 1140
Query 1141 TGTTTCAGGCAAATGATGTATTCTGGAGAGAAGCCAGATGAGGTTGTGTTTCTTGCGGTT 1200
||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1141 TGTTTTAGACAAATGATGTATTCCGGAGAGAAGCCAGATGAGGTTGTGTTTCTCGCGGTT 1200
Query 1201 CTGACTGCATGCTTGAACTCAGGCGAAGTAGACCTGGGTCTTAATTTCTTCGATAGCATG 1260
|| |||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||||
Sbjct 1201 CTAACTGCATGCTTGAACTCAAGCGAAGTTGACCTGGGACTTAATTTCTTTGATAGCATG 1260
Query 1261 AGGCTTGACTATGCAATTGAGCCCACACTGAAACATTATGTGTTAGTTGTTGATCTGTTA 1320
|||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| ||
Sbjct 1261 AGGCTTGACTATGCAATTGAACCCACGCTGAAACATTATGTGTTAGTCGTTGATCTGCTA 1320
Query 1321 GGTAGAGCAGGGAAGTTGGACGAAGCACATGAGCTTGTAGAATATATGCCGATAAATCCT 1380
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1321 GGTAGAGCAGGGAAGTTGAACGAAGCACATGAGCTTGTAGAAAATATGCCGATAAATCCT 1380
Query 1381 GATCTTACTACATGGGCTGCACTCTATCGTGCTTGCAAGGCACACAAGAGTAATAGGA-- 1438
|||||||| ||||||||||||||||||||||||||||| || |||||| || |||| |
Sbjct 1381 GATCTTACAACATGGGCTGCACTCTATCGTGCTTGCAAAGCGCACAAGGGTTATAGAAGG 1440
Query 1439 -CTGATATTGTGTTGCAAAATCTTTTGGAACTTGATCCAGAGCTTCGTGGTAGTTACATT 1497
|||| | ||||| |||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1441 GCTGAAAGTGTGTCACAAAATCTTTTGGAGCTTGATCCAGAGCTTTGTGGTAGTTACATT 1500
Query 1498 TTCTTAGACAAAACTCATGCGGCTAAAGGGAAGTAT-CAAGATGTAGAGAAAAGAAGATT 1556
|||||||||||||| |||||| |||||||||| || |||||||||||||||||||||||
Sbjct 1501 TTCTTAGACAAAACACATGCGTCTAAAGGGAAC-ATTCAAGATGTAGAGAAAAGAAGATT 1559
Query 1557 ATCGTTGCAGAAGA-AAGTCAAAGAAAGATCCAT-GGGATGTAGTTACATTGAATTAGAC 1614
||| |||||||||| || ||||||||||||| || |||||| ||||| || ||||| |||
Sbjct 1560 ATCATTGCAGAAGAGAA-TCAAAGAAAGATC-ATTGGGATGGAGTTATATCGAATTGGAC 1617
Query 1615 TGTCAACTGAACAAATTTGCAGCTGATGATTATACTCATAAGC-AAGCACAAGAGATACG 1673
||||||||||||||||| |||||| ||||||| ||||||||| || |||| ||||| |
Sbjct 1618 GGTCAACTGAACAAATTTTCAGCTGGTGATTATTCTCATAAGCTAA-CACAGGAGATTGG 1676
Query 1674 TTTGAAGCTTGAGG-GAATCATATCGCTCGCGATTGAGAGAGGATACATTCCGGGAGCTG 1732
|||||||||||| | || |||||||||| || ||| ||| |||||||| ||| |||||||
Sbjct 1677 TTTGAAGCTTGATGAGA-TCATATCGCTTGCCATTCAGAAAGGATACAATCCAGGAGCTG 1735
Query 1733 ATTGGTCGATTCATGACATTGAAGAAGAAGAGAAGGAAAGTGTTACGGGAATACATAGTG 1792
||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1736 ATTGGTCAATTCATGACATTGAAGAAGAAGAGAAGGAAAATGTTACGGGAATCCATAGTG 1795
Query 1793 AGAAACTGGCTCTTACACTTGGGCTTCTAAGGACTGCTCCTGGAACCACGATAAGGATCA 1852
||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||
Sbjct 1796 AGAAACTGGCTCTTACACTTGGGTTTCTAAGAACTGCTCCTGGGACCACGATAAGGATCA 1855
Query 1853 TTAAAAACCTTAGAATATGCGGAGATTGTCATTCTTTAATGAAATATGTTAGTAAGATCA 1912
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 TTAAGAACCTTAGAATCTGCGGAGATTGTCATTCTTTAATGAAATATGTTAGTAAGATCA 1915
Query 1913 GCCAAAGAGGTATCCTACTGAGAGATGCAAGACAGTTTCATCATTTCAAAGATGGAAGCT 1972
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1916 GCCAAAGAGATATTCTACTGAGAGATGCAAGACAGTTTCATCATTTCAAAGATGGAAGAT 1975
Query 1973 GTTCATGTGGTGATTATTGGTGA 1995
|||||||||||||||||||||||
Sbjct 1976 GTTCATGTGGTGATTATTGGTGA 1998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98844873105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5