BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311603
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05170.2 | Symbols: | Galactosyltransferase family protein ... 2078 0.0
AT2G32430.1 | Symbols: | Galactosyltransferase family protein ... 1214 0.0
> AT1G05170.2 | Symbols: | Galactosyltransferase family protein
| chr1:1491164-1494248 REVERSE LENGTH=1837
Length=1837
Score = 2078 bits (1125), Expect = 0.0
Identities = 1193/1226 (97%), Gaps = 4/1226 (0%)
Strand=Plus/Plus
Query 1 ATGTC-GACGAAGAACAAAGGAGAATATTCTTCTAGAAGCTTCGTATCGAGAAAATGGAC 59
||||| | |||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 318 ATGTCTG-CGAAGATCAAAGGAGAGTATTCTTCTAGAAGCTTCGTATCGAGAAAATGGAC 376
Query 60 GATATTACTCTGCTTAGGAAGCTTCTGCGTCGGAATGTTCTTCACCGATCGGATGTGGAA 119
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 377 GATATTACTCTGCTTAGGAAGCTTCTGCGTCGGAATGTTCTTCACCAATCGGATGTGGAA 436
Query 120 TATTCCGGAATCTAAAGGCATGTCTCGTCCATCTGTAACCGAAGCTGAGAGATTGAAACT 179
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 437 TATTCCGGAATCTAAAGGCATGTCTCATCCATCTGTAACCGAAGCTGAGAGATTGAAGCT 496
Query 180 GATCTCTGAAGGCTGCAATCCAAAAACTCTTTACCAGAAAGAAGTCAAAAGAGATCCTCA 239
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 497 GGTCTCTGAAGGCTGCAATCCAAAAGCTCTTTACCAGAAAGAAGTCAAAAGAGATCCTCA 556
Query 240 GGCTTTGTTTGGAGAAGTAGCCAATACACATATTGCATTACAGACATTGGATAAGACCAT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 GGCTTTGTTTGGAGAAGTAGCCAATACACATATTGCATTACAGACATTGGATAAGACCAT 616
Query 300 TTCAAGCTTAGAGATGGAGTTAGCTGCAGCTAGGTCAGTTCAGGAATCTTTACAAAACGG 359
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 617 TTCAAGCTTAGAGATGGAGTTAGCTGCAGCAAGGTCAGTTCAGGAATCTTTACAAAACGG 676
Query 360 TGCTCCTGTATCAGATGATATGGGGAAGAAGCAACCGCTGGGAA-AGAGACGGTTTTTGA 418
||||||| |||||||||||||||||||||||||||| | || || |||||||||||||||
Sbjct 677 TGCTCCTTTATCAGATGATATGGGGAAGAAGCAACCTCAGG-AACAGAGACGGTTTTTGA 735
Query 419 TGGTCGTCGGGATTAATACAGCTTTTAGTAGCAGAAAGAGAAGAGATTCTATTCGAGCAA 478
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 TGGTCGTTGGGATTAATACAGCTTTTAGTAGCAGAAAGAGAAGAGATTCTATTCGAGCAA 795
Query 479 CGTGGATGCCTCAAGGTGAAAAAAGGAAGAGACTAGAAGAGGAGAAGGGGATTATCATCC 538
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 CTTGGATGCCTCAAGGTGAAAAAAGGAAGAGACTAGAAGAGGAGAAGGGGATTATCATCC 855
Query 539 GATTCGTCATTGGTCACAGTGCCACGACCGGGGGAATTCTAGATCGAGCTATAGAAGCTG 598
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GGTTTGTCATTGGTCACAGTGCCACGACCGGGGGAATTCTAGATCGAGCTATAGAAGCTG 915
Query 599 AGGACAGGAAGCATGGAGATTTCTTGAGACTGGACCATGTTGAAGGGTACCTAGAGTTGT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 AGGACAGGAAGCATGGAGATTTCTTGAGACTGGACCATGTTGAAGGGTACCTAGAGTTGT 975
Query 659 CAGGCAAGACGAAAACTTACTTTTCTACAGCATTTTCCATGTGGGATGCAGATTTCTATG 718
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 976 CAGGCAAGACGAAAACTTACTTTTCTACAGCATTTTCGATGTGGGATGCAGATTTCTATG 1035
Query 719 TCAAAGTAGATGATGATGTTCATGTCAATATAGCAACTCTTGGGGAAACTCTTGTCAGAC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1036 TCAAAGTAGATGATGATGTTCATGTCAATATAGCAACTCTTGGGGAAACTCTTGTTAGAC 1095
Query 779 ACCGGAAAAAACCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 ACCGGAAAAAACCACGGGTCTATATTGGTTGCATGAAATCTGGCCCTGTCCTCTCTCAAA 1155
Query 839 AAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAATTTGGTGAAAATGGGAACAAATACT 898
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1156 AAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAGTTTGGTGAAAATGGGAACAAATACT 1215
Query 899 TCCGTCATGCTACTGGACAATTATACGCCATTTCAAGGGACTTGGCTTCTTATATATCAA 958
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 TCCGTCATGCTACTGGACAGTTATACGCCATTTCAAGGGACTTGGCTTCTTATATATCAA 1275
Query 959 TCAATCAGCATGTTCTTCACAAGTATGCGAACGAAGATGTTTCGTTAGGAGCTTGGTTTA 1018
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1276 TCAATCAGCATGTTCTTCACAAGTATGCGAACGAAGATGTTTCGCTAGGAGCTTGGTTTA 1335
Query 1019 TTGGGATTGATGTTAAACACATTGATGACAGAAGATTATGCTGCGGAACTCCTCCTGATT 1078
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1336 TCGGGATTGATGTTAAACACATTGATGATAGAAGATTATGCTGCGGAACTCCTCCTGATT 1395
Query 1079 GTGAATGGAAAGCACAAGCTGGAAACATCTGTGTAGCATCATTCGACTGGAGCTGCAGTG 1138
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1396 GCGAATGGAAAGCACAAGCTGGAAACATCTGTGTAGCATCATTCGACTGGAGCTGCAGCG 1455
Query 1139 GAATCTGCAGATCAGCAGATCGCATCAAAGAGGTTCATCGACGTTGTGGTGAAGGCGAAA 1198
||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||||
Sbjct 1456 GAATCTGCAGATCCGCAGATCGCATCAAAGAGGTTCATAGACGTTGCGGTGAAGGTGAAA 1515
Query 1199 AGGCTCTTTGGAGTGCCACATTTTGA 1224
||||||||||||||||||| ||||||
Sbjct 1516 AGGCTCTTTGGAGTGCCACGTTTTGA 1541
> AT2G32430.1 | Symbols: | Galactosyltransferase family protein
| chr2:13771296-13774502 FORWARD LENGTH=1960
Length=1960
Score = 1214 bits (657), Expect = 0.0
Identities = 1052/1242 (85%), Gaps = 30/1242 (2%)
Strand=Plus/Plus
Query 1 ATGTCGACGAAGAACAAAGGAGA--ATATT-CTTCTAGAAGCTTCGTATCGAGAAAATGG 57
||||||||||||| ||||||||| | || | || ||||| || ||||| | |||||||
Sbjct 331 ATGTCGACGAAGATCAAAGGAGAGCTTTTTCCCTCCAGAAGTTTAGTATCTAAAAAATGG 390
Query 58 ACGA-TATTACTCTGCTTAGGAAGCTTCTGCGTCGGAATGTTCTTCACCGATCGGATGTG 116
|| | | ||||||||||| || ||||||||| ||||||| || ||||||||| |||||||
Sbjct 391 AC-ATTTTTACTCTGCTTTGGGAGCTTCTGCTTCGGAATATTATTCACCGATAGGATGTG 449
Query 117 GAATATTCCGGAATCTAAAGGCATGTCTCGTCCATCTGT-A--ACCGAAGCTGAGAGATT 173
|| ||||||||| ||||||| |||| |||| |||||||| | || |||||||| |||||
Sbjct 450 GATTATTCCGGAGTCTAAAGACATGCCTCGACCATCTGTAAGTACAGAAGCTGAAAGATT 509
Query 174 GAAACTGATCTCTGAAGGCTGCAATCCAAAAACTCTTTACCAGAAAGAAGTCAAA-AGAG 232
||| ||||||||||| ||||| |||| ||||| || |||||||||||||| ||| | |
Sbjct 510 GAAGCTGATCTCTGAGGGCTGTGATCCGAAAACCCTCTACCAGAAAGAAGT-AAATCGTG 568
Query 233 ATCCTCAGGCTTTGTTTGGAGAAGTAGCCAATACACATATTGCAT-TACAGACATTGGAT 291
|||||||||| |||||||||||||| |||| || |||| || | ||||||||||||||
Sbjct 569 ATCCTCAGGCATTGTTTGGAGAAGTTTCCAAGACTCATAACGC-TATACAGACATTGGAT 627
Query 292 AAGACCATTTCAAGCTTAGAGATGGAGTTAGCTGCAGCTAGGTCAGTTCAGGAATCTTTA 351
||||| |||||||||||||||||||||||||||||||| || || | |||||| ||||||
Sbjct 628 AAGACTATTTCAAGCTTAGAGATGGAGTTAGCTGCAGCAAGATCGGCTCAGGAGTCTTTA 687
Query 352 CAAAACGGTGCTCCTGTATC-AGATGATATGGGGAAGAAGCAACCGCTGGG-AAAGAGAC 409
||||||||||||| |||| | ||||||||| |||||||||| | ||| ||| ||||
Sbjct 688 GTAAACGGTGCTCCTATATCTA-ATGATATGGAGAAGAAGCAATTACCGGGGAAA-AGAC 745
Query 410 GGTTTTTGATGGTCGTCGGGATTAATACAGCTTTTAGTAGCAGAAAGAGAAGAGATTCTA 469
||| ||||||||| || ||||||||||| |||||||||||| |||||||||||||||||
Sbjct 746 GGTATTTGATGGTTGTAGGGATTAATACTGCTTTTAGTAGCCGAAAGAGAAGAGATTCTG 805
Query 470 TTCGAGCAACGTGGATGCCT-CAAGGTGAAAAAAGGAAGAGACTAG-AAGAGGAGAAGGG 527
||||| |||| ||||||||| || ||||| ||||| |||| | | | |||| ||||||||
Sbjct 806 TTCGAACAACTTGGATGCCTTCA-GGTGAGAAAAGAAAGA-AGTTGGAAGAAGAGAAGGG 863
Query 528 GATTATCATCCGATTCGTCATTGGTCACAGTGCCACGACCGGGGGAATTCTAGATCGAGC 587
||||| || || || || |||||||| ||||||||| | || ||||||||||| ||| |
Sbjct 864 AATTATTATACGGTTTGTGATTGGTCATAGTGCCACGGCTGGCGGAATTCTAGACCGATC 923
Query 588 TATAGAAGCTGAGGACAGGAAGCATGGAGATTTCTTGAGACTGGACCATGTTGAAGGGTA 647
|| ||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||
Sbjct 924 CATTGAAGCAGAGGACAAGAAGCATGGAGATTTCTTGAGATTGGACCATGTTGAAGGATA 983
Query 648 CCTAGAGTTGTCAGGCAAGACGAAAACTTACTTTTCTACAGCAT-TTTCCATGTGGGATG 706
||| ||||| |||||||| |||||||| || ||||||||||| | |||| | ||||||||
Sbjct 984 CCTTGAGTTATCAGGCAAAACGAAAACATATTTTTCTACAGC-TGTTTCGAAGTGGGATG 1042
Query 707 CAGATTTCTATGTCAAAGTAGATGATGATGTTCATGTCAATATAGCAACTCTTGGGGAAA 766
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1043 CAGAGTTCTATGTCAAAGTAGATGATGATGTTCATGTAAATATCGCAACTCTTGGGGAAA 1102
Query 767 CTCTTGTCAGACACCGGAAAAAACCA-CGGGTCTATATTGGTTGCATGAAATCTGGCCCT 825
||||||| |||||| |||| |||| | || |||||| | || |||||||||||||| ||
Sbjct 1103 CTCTTGTTAGACACAGGAAGAAAC-ATCGAGTCTATCTCGGCTGCATGAAATCTGGTCCA 1161
Query 826 GTCCTCTCTCAAAAAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAATTTGGTGAAAAT 885
|| || ||||||||||| || || ||||||||||| ||||| |||||||||||||| |||
Sbjct 1162 GTACTATCTCAAAAAGGAGTTAGATACCATGAGCCTGAGTATTGGAAATTTGGTGAGAAT 1221
Query 886 GGGAACAAATACTTCCGTCATGCTACTGGACAATTATACGCCATTTCAAGGGACTTGGCT 945
|| ||||| ||||||||||| ||||||||||| |||||||||||||| || |||||||||
Sbjct 1222 GGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCTAGAGACTTGGCT 1281
Query 946 TCTTATATATCAATCAATCAGCATGTTCTTCACAAGTATGCGAACGAAGATGTTTCGTTA 1005
||||| || || | |||||||||||||| ||||| ||||| || || |||||| | |||
Sbjct 1282 TCTTACATTTCCCTTAATCAGCATGTTCTGCACAAATATGCAAATGAGGATGTTACATTA 1341
Query 1006 GGAGCTTGGTTTATTGGGATTGATGTTAAACACATTGATGACAGAAGATTATGCTGCGGA 1065
|| ||||||||||| ||| ||||||| | ||| || ||||| |||||| |||| || ||
Sbjct 1342 GGTGCTTGGTTTATCGGGCTTGATGTGACACATATCGATGATAGAAGACTATGTTGTGGC 1401
Query 1066 ACTCCTCCTGATTGTGAATGGAAAGCACAAGCTGGAAACATCTGTGTAGCATCATTCGAC 1125
||||||||||||||||||||||| |||||||| || ||||| |||||||| |||||||||
Sbjct 1402 ACTCCTCCTGATTGTGAATGGAAGGCACAAGCAGGCAACATATGTGTAGCTTCATTCGAC 1461
Query 1126 TGGA-GCTGCAGTGGAATCTGCAGATCAGCAGATCGCATCAAAGAGGTTCATCGA-CGTT 1183
|||| | || || || |||||||||||||| ||||| || ||||||||||| | | || |
Sbjct 1462 TGGACG-TGTAGCGGTATCTGCAGATCAGCTGATCGGATAAAAGAGGTTCA-CAAGCGAT 1519
Query 1184 GTGGTGAAGGCG-AAAAGGCTCTTTGGAGTGCCACATTTTGA 1224
|||||||| || |||| ||| |||||| |||| |||||||
Sbjct 1520 GTGGTGAAC-CGGAAAACGCTATTTGGAAAGCCAGATTTTGA 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60140252910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5