BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311616
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05290.1 | Symbols: | CCT motif family protein | chr1:15391... 1435 0.0
> AT1G05290.1 | Symbols: | CCT motif family protein | chr1:1539152-1540562
REVERSE LENGTH=1126
Length=1126
Score = 1435 bits (777), Expect = 0.0
Identities = 1001/1106 (91%), Gaps = 27/1106 (2%)
Strand=Plus/Plus
Query 1 ATGGGATCACCATTGTGCGATCATTTGGCTAGGCTTTGTCTTCAATGTGATTGGAAGTTA 60
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 17 ATGGGATCACCATTGTGCGAGCATTTGGCTAGGCTTTGTCTTCAATGTGATTTGAAGTTA 76
Query 61 CACTCTAAGAGTCCTGTAAACAATTACGATTATTCGCGGATTCCGTTGTGTAATAATTGC 120
|||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 77 CACTCTAAGAGTAGTGTAAACAATTACAACTATTCGCGGATTCCGTTGTGTAATAATTGC 136
Query 121 AATTCGCAGACCGCTGTTGTAGAATGCCTTGAACAAGGGTTGTGCCTATGCCAAACATGC 180
||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 137 GTTTCGCAGACCGCTCTTGTAGAATCCCTTGAACAAGGGTTGTGCCTATGCCAATCATGC 196
Query 181 TTTTCAAA-CCCTAATGTATTCTCACGTTTTATTCTTCTTC---GAAACGGTTCTAGTGA 236
|||||||| ||| |||||| |||| |||||| ||||||||| |||||| | |||||||
Sbjct 197 TTTTCAAATCCC-AATGTAATCTCGCGTTTTCTTCTTCTTCTTAGAAACGATGCTAGTGA 255
Query 237 TAATTCAGCATATAATTGTCCACTGGATCTTGATTCCtcttcttcttcttcttcatcttc 296
| |||| |||||||||| ||||||||||||||||||||||||||| |||| |||||||||
Sbjct 256 TTATTCGGCATATAATTTTCCACTGGATCTTGATTCCTCTTCTTCGTCTTGTTCATCTTC 315
Query 297 ttTTATTGATCGCAATTGGGCATTTTCCCTTGGTTCCTTACCTCTCAATAATGAGGATTC 356
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 316 TTTTATCGATCGCAATTGGGAATTTTCCCTTGGTTCCTTACCTCTCAATAATGAGGACTC 375
Query 357 ATCATCATCTTTTGAAATCCTTCAAATATTTGAAAATCATACAAAGAATTATAGTGATCA 416
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 376 ATCATCATCTTTTGAAATCCTTCAAATATTTGAAGATCATACAAAGAATTATAGTGATCA 435
Query 417 ACATGTGCTGACGCTTCAGCCAGATTATTT-GA-A-CATTCCTAAGGATAGTTCATGCTC 473
||| ||| ||||||||||||| |||||||| || | |||||||||||||||||||||||
Sbjct 436 ACAAGTGTTGACGCTTCAGCCCGATTATTTGGACATAATTCCTAAGGATAGTTCATGCTC 495
Query 474 AAGCTTCAAAGGCTATGAAACTAAAGAAGATATAGAGAATGTTTTGCTCAACACTTTTGA 533
| |||||||| |||| |||||||||||||||||||||||||||||| | |||||||||||
Sbjct 496 AGGCTTCAAAAGCTACGAAACTAAAGAAGATATAGAGAATGTTTTGATGAACACTTTTGA 555
Query 534 TGGCGCCGA-G--GCAGTATTAGACCTAAAAGAATATAACCTCGAGGAAGATTTGATCGT 590
||||||||| | |||||||||||||||||| ||||||||| |||||||||||||||| |
Sbjct 556 TGGCGCCGAGGCAGCAGTATTAGACCTAAAACAATATAACCCCGAGGAAGATTTGATCCT 615
Query 591 CACCAATCAACTAATCGATGAATTATCGAA-ACACAATTCAGAGATCACGCCTACCAATA 649
|| | | ||||||||||||||| | || | |||||||||||| |||||| |||||||
Sbjct 616 CA-C--GGAGCTAATCGATGAATTAGC-AAGAGACAATTCAGAGACCACGCCGACCAATA 671
Query 650 -TTATA-CAATCTTCACCATCGGGTATGTCATCATCGCTTATACAAAAAGATTACAGCAT 707
|| || ||| ||||| |||| |||||| |||||| |||||| |||||||||| ||
Sbjct 672 CTT-TACCAA-CTTCAGCATCTGGTATG---TCATCGGATATACATAAAGATTACAACAC 726
Query 708 TGAAGCTTTGGCTAACGCAAGTTCTCAAGATCATTATATAAATCAAATGATTGGCTCAAA 767
||||||||||||||| ||||||||||||||| ||| |||||| |||||||||||||||||
Sbjct 727 TGAAGCTTTGGCTAATGCAAGTTCTCAAGATTATTTTATAAACCAAATGATTGGCTCAAA 786
Query 768 AGCAAAGGAAGAGACCAATAATCTTGCCATATTCCCTAACCCTCTTGCTCAACTTGACTG 827
||||||||||||||||||| ||||||| ||| |||||||| |||||| ||||||||||||
Sbjct 787 AGCAAAGGAAGAGACCAATGATCTTGCAATACTCCCTAACGCTCTTGTTCAACTTGACTG 846
Query 828 TGGACAAACGCAGTTGATTTTTACCGATGAGATGTTACCATGGCAGAATCAAACATTTGT 887
||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 847 TGGACAATCGCAGTTGATACTTACCGATGAGATGTTACCATGGGAGAATCAAACATTTGT 906
Query 888 ACCTGTCAAGAGATCTAGTCC-ACAAGATCGAGAAGAGGCGAAGAAGAGATATTTCGaaa 946
|||||| ||| ||| |||||| | |||||||||||||||| ||||| |||||||||||||
Sbjct 907 ACCTGTTAAGGGATTTAGTCCGA-AAGATCGAGAAGAGGCCAAGAAAAGATATTTCGAAA 965
Query 947 aaaaGAAGAAACGCAAGTTTGGGAAGCAAATTAGATATGAATCTCGAAAATCTACAGCTG 1006
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 966 AGAAGAAGAAACGCAAGTTTGGGAAACAAATTAGATATGAATCTCGAAAATCTACAGCAG 1025
Query 1007 ATACGAAGAGAAGAATGAAAGGAAGATTTACAAAAGCTGGTGCTGAGTACGATTATGACC 1066
||||||||| |||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 1026 ATACGAAGAAAAGAATGAAAGGAAGATTTACAAAAGCTGGTGCTGATTATGACTATGACC 1085
Query 1067 CACGAGCTGAAA-ATATTGACAAAGG 1091
|||||||| || ||||| |||||||
Sbjct 1086 CACGAGCT-AATGATATTAACAAAGG 1110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54567992415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5